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GT20242

CSHL Arabidopsis genetrap mutant lines

Original: GT20242

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20242

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 17752672 [Map]; Strand: w
      • AT3G48070.2 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: intron5 (3UTR)
    Flanking Genome Sequence: GT20242 - 5-prime edge 
    TCTCCCTGTT TACGAGACAT ACTTGAGTCA AACTTTCATA TCGAGCTAAC 
    TAGCATACCC ATGGGCATAG GGCAAGTTTC AAATTACTTT TTGTGTTTTA 
    ATCGTTTTCT TCTTTGGTTA TGTAGTAGCT AGAACTTGGA GCGTTTGCAC 
    AGCCACTTGT TTTGAGGTAT AGAGGTTAGT AATGTTATAA ACAATTGAAG 
    TAACCTCAGG GTCTATTCTG ATGACATTCT GGTCCTCTTT CCTTCTGTCA 
    ACACTAAGGA AGATTGTTTG TTACTG

AT3G48070.2

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G62910.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR