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GT20041

CSHL Arabidopsis genetrap mutant lines

Original: GT20041

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT20041

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 20959971 [Map]; Strand: w
      • AT5G51590.1 - [+] show detail - AT hook motif DNA-binding family protein
        Distance: -858; Region: promoter
    Flanking Genome Sequence: GT20041 - 3-prime edge 
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTATCAA CAACAATCGT 
    GATATATAGG TCCATCCTGA AGATCTATAA CCTAATCCAC CCTAAAAACA 
    AACTTGTAGA CTTTATTTGC GGGAATTAGA CATCCTAATG AAAAAATTTG 
    GATAACTTTG GTACGGAGTC ATTACCACCA CTCCTAATGT CAGGGATTAG 
    GGACAAAGAA GATTTTGTAC TTGGTCTTTG GGAGGCTAAA TTGGTCAACG 
    TTTTGGTTAT AGTCAACGTG GATAGACTGA AAAAGAAAAG AGTGATAATA 
    TTAGGTGACA GAAATATCTT AAATCTTTTT CTTATTTTTC ATTTTGAATA 
    GTGTGGAACA TCTCAAAAAT CAAGTCCAAC TGTATATAAT TAAAAATTTG 
    CCCCTACTTA TTTTATTAAA TTACTTAAAA ACTTTAGCTG TATCCCAAAC 
    TCCAAGACTT TTGTTAGGAA AGGAGTGTAA ATTTTTGAAT TTTCTAATTA 
    AGCCATTATT ACAATATTTT AGAATTACAC TTTTCTCGTT TCTCTCTCCT 
    TTTTTTTTTT GAATTTTTCC CTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 18010740 [Map]; Strand: w
      • AT4G38500.1 - [+] show detail - Protein of unknown function (DUF616)
        Distance: 0; Region: exon7 (3UTR)
    Flanking Genome Sequence: GT20041 - 5-prime edge 
    AGTAAGAACT TCTAAAGCTG GTTGAGACAG TAAACATTAT ACACTAGTTT 
    TTAACTTTCG TTTGATCGCT GTCTTCGGTT TTCCGAATTT TCCAATTTAT 
    CAAACATACA CGTCTTTTGA ATTCTATTTG TAGATCGAAG AATCAAATGT 
    AAAACCCAAA TTGTTATAAA AAAAGAAGAA GAAGCTGCAT TGACATTCGT 
    GACAGTAATA AGACAAACAA ATGTATGTTG TTCTGAACCA GTAATTTGGT 
    ACCCCAAAAA AAAGATGCAA AATCTCATAA ATTATACAAG AATTTCAATT 
    TCTCTTACAA AAAGAATAAT CAACCTGGCT TGCTCAGTTT CGAAGACAAT 
    AATAAAGGGT CTAGCGATTG GGAACAAACA CCATTTATTG GGACGGACGA 
    CACAGAGGTG TGATCCAACC GCAGAAGTAA AAAATAAAGA TGCATTTGGA 
    CATATCATCA CACCAAGGCA GTAGAAACTA TGTTCTTCAG TTGGTGGTAT 
    CGCGACTGTA AAACTGATCA AGGGTTTTCG CGGGTATACG GTGAAGTAAC 
    TCACGGGGGA AGATTCTGAG GAGAGTCCAT GCTAGGTCGA GTGACTGGAA 
    GATGTTTCGG GTATCATAAG CTCCCTGAGC CACAAACTTC CTCTCGAACT 
    TATCCAAGAA CTCAAGATAT AGCTGTTTGC ATCAGATAAA AAAAGTG

AT4G38500.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF616)
Computational Description
Protein of unknown function (DUF616); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF616 (InterPro:IPR006852); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF616) (TAIR:AT1G28240.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G51590.1

Model type
Protein coding
Short Description
AT hook motif DNA-binding family protein
Computational Description
AT hook motif DNA-binding family protein; FUNCTIONS IN: DNA binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 19 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF296 (InterPro:IPR005175), AT hook, DNA-binding motif (InterPro:IPR017956); BEST Arabidopsis thaliana protein match is: AT hook motif DNA-binding family protein (TAIR:AT4G25320.1); Has 1243 Blast hits to 1178 proteins in 110 species: Archae - 0; Bacteria - 11; Metazoa - 305; Fungi - 62; Plants - 787; Viruses - 15; Other Eukaryotes - 63 (source: NCBI BLink).
Link
InterPro Scan - TAIR