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GT19861

CSHL Arabidopsis genetrap mutant lines

Original: GT19861

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19861

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3534942 [Map]; Strand: w
      • AT3G11280.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -95; Region: promoter
      • AT3G11280.2 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -136; Region: promoter
      • AT3G11285.1 - [+] show detail - pre-tRNA
        Distance: -204; Region: promoter
    Flanking Genome Sequence: GT19861 - 5-prime edge 
    GGGAACAGAG TGAAGAGAAA AAAAGGAAAG GTTTCTTTAT TTTTGGGAAG 
    ATTTGGCGTA TTTGGATTGG AGAACAGCGA ATGGCACCAC TCCACTCGGA 
    TTCTTGGGGT TCATCTCTCT CGA

AT3G11280.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Curator Summary
Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11280.2

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Curator Summary
Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11285.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Arg (anticodon: CCT)
Link
InterPro Scan - TAIR