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GT19706

CSHL Arabidopsis genetrap mutant lines

Original: GT19706

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19706

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 14294160 [Map]; Strand: w
      • AT2G33790.1 - [+] show detail - arabinogalactan protein 30
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT19706 - 5-prime edge 
    GGAGCATGAA GTATCCGTTC TTGTCCCTCT ACTATCTCCG ATATTGAGTT 
    CTTCTTGTTC TTGCACACAA GTCTCACCAC CGCATCTGTA TCCCCGGATA 
    ACACAAACGA AATAAAAAGT GAAAAAATAG TACTTGAATA GATTTGTTAT 
    ACAGAAATTG TTTTAAAAGA ATGCAAGAGC ATGTACGTGT TAACCAAAAC 
    CCGATTAATT GTTAGATTAG TTATGGTAAA TTTACTCTCT TTTTTTAAGA 
    ACCATGACTT GAACACGATT TTTTAACTAG TTGAGCTAAA TTTTGGTATT 
    ATAGGAAACT TGGGGAAAAC AAGGACAAGG CTTCGCTACA GTAGATTGTC 
    TTAACCAAAA ACATATTGAT TATAATTAAA ATTCAAAAAC ATTGAAAGAA 
    GTTCATTGTT TTTACTTAGT TTTCCATGGT AAATTTATGT TATCAATTCG 
    TGAAGGGACG AGAATGATAC GACCGGCTCT GAACTAATCT CGCTTGGTAG 
    CATATAGTTA AAAGTTTACA CAAAAAATTT TGAACAACCG ACAATGAGAT 
    TATGGATACT TTTTAACATA TGCCTAAAAT AAATGTAAAG AATGAAGTAT 
    GCATGCAGCA TACCTTTAGC AAAAAAA

AT2G33790.1

Model type
Protein coding
Short Description
arabinogalactan protein 30
Curator Summary
pollen Ole e 1 allergen protein containing 14.6% proline residues, similar to arabinogalactan protein (Daucus carota) GI:11322245, SP:Q03211 Pistil-specific extensin-like protein precursor (PELP) {Nicotiana tabacum}; contains Pfam profile PF01190: Pollen proteins Ole e I family
Computational Description
arabinogalactan protein 30 (AGP30); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: arabinogalactan protein 31 (TAIR:AT1G28290.1); Has 4773 Blast hits to 1945 proteins in 284 species: Archae - 10; Bacteria - 247; Metazoa - 746; Fungi - 274; Plants - 1194; Viruses - 386; Other Eukaryotes - 1916 (source: NCBI BLink).
Link
InterPro Scan - TAIR