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GT19201

CSHL Arabidopsis genetrap mutant lines

Original: GT19201

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT19201

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 26920829 [Map]; Strand: w
      • AT5G67450.1 - [+] show detail - zinc-finger protein 1
        Distance: -880; Region: promoter
      • AT5G67455.1 - [+] show detail - pre-tRNA
        Distance: -843; Region: promoter
    Flanking Genome Sequence: GT19201 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TAGGCTAGAG 
    CTTCTTCTTC TTTTTCTTAT GTTGATTGTA ATACAGCTCC GAAGATATGG 
    GACTCACTTA CGAGAACAGA TGTATGCCTA AGGTCACCTT TGACGTTCCT 
    AATTGACAGA AATTTTCAAA TCGATGCAAT TGGAATAAAA AGCTAGGGGG 
    ACTACGAAGA AAAGTGCGAA ATAAAAGCAA CTTGAAAGCC ATACCAAATT 
    TCGGAATTTG ATGAACTAAA AACCTTTGAA GAATTCTCGA CAATTGGTGG 
    AAACTTCGAC TTCTGCCGAT GAGAAATTAA TGGGAAATTC ATATACTTGA 
    TCGGCAAAAT TAAGAAAATG CAGCGTGGAG AAAATAAAAC CATTGAA

AT5G67450.1

Model type
Protein coding
Short Description
zinc-finger protein 1
Curator Summary
Encodes zinc-finger protein. mRNA levels are elevated in response to low temperature, cold temperatures and high salt. The protein is localized to the nucleus and acts as a transcriptional repressor.
Computational Description
zinc-finger protein 1 (ZF1); CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087); BEST Arabidopsis thaliana protein match is: C2H2 and C2HC zinc fingers superfamily protein (TAIR:AT3G49930.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G67455.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Met (anticodon: CAT)
Link
InterPro Scan - TAIR