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GT18897

CSHL Arabidopsis genetrap mutant lines

Original: GT18897

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18897

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18292845 [Map]; Strand: c
      • AT3G49330.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 797; Region: intergenic
      • AT3G49340.1 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: 502; Region: intergenic
    Flanking Genome Sequence: GT18897 - 3-prime edge 
    CCGTTACCGA CCGTTTTCAT CCCTAGTTAC ACCAATGTAA TACATGATTC 
    CACCAACATA ACTTCCAAAA TACATTTATC AACAACAAAT TTCAAAATAT 
    ATCATGCGAC TGCAAAAATT CAAGTATTGA AAAGGGTATT GTCAATCCCT 
    CTGAACAAAC ACATCGACAT ATATATTCGA ATAATATATG AATATAATGT 
    TGCATTGCAT GTGTGAAGAG CATGGAACGA ATATCCCATC AAGAGAATTG 
    ACCATTCTGA ATGGAGTATT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18292391 [Map]; Strand: c
      • AT3G49330.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily protein
        Distance: 343; Region: intergenic
      • AT3G49340.1 - [+] show detail - Cysteine proteinases superfamily protein
        Distance: 956; Region: intergenic
    Flanking Genome Sequence: GT18897 - 5-prime edge 
    GTTATGATAA AAGAAATGAC GTGTAAAAAA TGACTGAACC TATATTTTCC 
    TTCCAAAGCA AATGACCATG ACCAAACCAA AAACTATTGT ATATTGAATT 
    TTTTGAATTT TGGTTGAATA AATCAGACAA ATACCATTGG ACACTGAATG 
    ATAAGAATCG AAGCTCCGAC TTTGGATTTA TGTCTTTCTT TT

AT3G49330.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily protein
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily protein; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT5G24370.1); Has 41 Blast hits to 41 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G49340.1

Model type
Protein coding
Short Description
Cysteine proteinases superfamily protein
Computational Description
Cysteine proteinases superfamily protein; FUNCTIONS IN: cysteine-type endopeptidase activity, cysteine-type peptidase activity; INVOLVED IN: proteolysis; EXPRESSED IN: 10 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C1A, papain (InterPro:IPR013128), Proteinase inhibitor I29, cathepsin propeptide (InterPro:IPR013201), Peptidase C1A, papain C-terminal (InterPro:IPR000668), Peptidase, cysteine peptidase active site (InterPro:IPR000169); BEST Arabidopsis thaliana protein match is: Cysteine proteinases superfamily protein (TAIR:AT2G27420.1); Has 7805 Blast hits to 7737 proteins in 710 species: Archae - 57; Bacteria - 222; Metazoa - 3269; Fungi - 4; Plants - 1892; Viruses - 135; Other Eukaryotes - 2226 (source: NCBI BLink).
Link
InterPro Scan - TAIR