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GT18788

CSHL Arabidopsis genetrap mutant lines

Original: GT18788

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18788

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3535209 [Map]; Strand: w
      • AT3G11280.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -362; Region: promoter
      • AT3G11280.2 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -403; Region: promoter
      • AT3G11285.1 - [+] show detail - pre-tRNA
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT18788 - 5-prime edge 
    CTTTCTCCCT GCCTGTAGCT CAGTGGATAG AGCGTCTGTT TCCTAAGCAG 
    AAGGTCGTAG GTTCGACCCC TACCTGGCGC GATTTATCTC TTTTTATATC 
    TTAATTTTGT CTCCTTAAGG AGGTTGTTTA GGATTAAGTT CTTACCTGGA 
    ATTAAGTGAT GATTGGTTTT AGTATCTATG CGTCGGTGGA AAATATTTTT 
    AGAAAGTGTG ACAGATTCAA TAGCTAAAGC TCATTAAATC CCACTATCTC 
    TCCATTTTAC TTGTGATGCT CACATAAGTT TTAAATTACT TTCTGCAAAC 
    AGAGAAAATC AAATAAAAGT ATATCGGTTG TATCAACTAA TCAAACTGTA 
    CAAGGTTTTT TAACTTAAGT TAATTTTGAA GAAGAGAAGG CTACATAGAG 
    TCATAGACGA TAGGATACGA ATGCTTTGAA GTTTATTTCT CATCTGCAAT 
    AGAGACAAGA GTAATTTCTT GCGACAAAAG TTAACCAGTA ACTCTTATAA 
    TATTTCGACT GTCATAAAAT CTTTCAAGGA ACCTAATAAT ATAACATCTC 
    ACACTGTTCA AAAGATAAAT CAAGAGTTCT TAGCATAATA AGACATAAGC 
    AGAAGAAGTT TGGGAGAATA TGACGATCTT AGGCAGCAAT GGTAAGGCCA 
    CCAGATCGAA GTCTAAGCAG CCAAGACATT CTCAAACTTG AGTTCTTCAA 
    CAGCAAGAAA ATCTCTCTGT ACTCTTTCTT CACAAACAAA TCCAACGCAA 
    ACAAGTAAAG ATCACTACCT TGCTCAACCT CTTCCATGGA GTCTAAACAC 
    TCAATGCATT CCCCAATGGT ATACTCGTAC TGGCTAACCG ATGCACTCA

AT3G11280.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Curator Summary
Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11280.2

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Curator Summary
Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11285.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Arg (anticodon: CCT)
Link
InterPro Scan - TAIR