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GT18758

CSHL Arabidopsis genetrap mutant lines

Original: GT18758

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18758

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 14628345 [Map]; Strand: w
    Flanking Genome Sequence: GT18758 - 3-prime edge
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTACTCAA 
    TACTCGTCAC AGGCTTCTTA CCAGAGACAG GTTAAGCCGA TGGGGTTTGG
    CAACTCCTTC TTCTTGTCTC CTCTGTAATT TGGTTGATGA GTCTAGGCAA
    CACTTATTTT TTGAGTGTTC GTACGCTGCG GAAGTTTGGA ATTATTTCTC
    TCAGAAGGCC CATGTTTCTC CTCCAGTTAT GTTCTTGGAT GGAGTTAGAT
    GGTTGAAGAA TCCTTGCCGT GACAAGAATA TAGCTTTGAT TCTTCGTCTT
    GCCTATCATG CCTCAGTTTA TTATATTTGG AAAGAGCGCA ATTCAAGACT
    ACATAATTCC TCCTCCAAAC CGGCCTCAGC TATCATTTTG GAGATCAAGA
    ACATTATTCG GTGTCACCTA GATCCTCTAT CTCGGGCTCA ATGGATCACT
    CCCCCGGC
  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18950471 [Map]; Strand: w
      • AT3G51020.1 - [+] show detail - unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein ...
        Distance: 250; Region: intergenic
      • AT3G51030.1 - [+] show detail - thioredoxin H-type 1
        Distance: 525; Region: intergenic
    Flanking Genome Sequence: GT18758 - 5-prime edge
    ACTTTCTCCC TGAATCCGAT GGTATCCATT GATGCTAGGG TTCTTAATTA 
    TAAAAACCAT AACATAATGG AATGTTTCAA AGCTTTGCAT TATTTTTGTG
    TTAAGGTGCA TTATTTACCA GATATCTATG GATAAACAAT TGCTTCGGTA
    GCATCTTTCA AAATGATTTC GTGGAGGGAT TTCTCTCTTT TCTTAAACGA
    AATGATTTTT TTTTTATCAA ATTGAGTTTC CATTAAACGT TCTGATAATA
    TTTCTAAGAA TCAAAGGGAT TTTGTTTTTA AAAACTTATT ATTGGGGAAA
    ATCCTTTTGC AATTTAATAC TACATAGAAG GAAACAAAAC CCTTCATTTG
    AACATATTTG CCATCCGAAT CGAAACATTG CCAAGGATCA ATTCCAAGCT
    TCACTTGCCC AAAATTCAAA CCGTTTTCAA AAACACAAAG GACCTTCTGA
    ATAAGCATCA CCTTTAAAAA AAGGCTCTCT CTTTATTCAC GCCCATTGCA
    AAAAATTTTT TTTTTTGGGG AAAAAAGGGA AAAAATTATT TTTAAAAAAA
    CTTTTGAACC CCCAAAGAAT TTTTTTTTGG GGAAAACAAA AAAATTTTTC
    CCCTTCAAA

AT3G51020.1

Model type
Protein coding
Computational Description
unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G66370.1); Has 19 Blast hits to 19 proteins in 4 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G51030.1

Model type
Protein coding
Short Description
thioredoxin H-type 1
Curator Summary
encodes a cytosolic thioredoxin that reduces disulfide bridges of target proteins by the reversible formation of a disulfide bridge between two neighboring Cys residues present in the active site. Thioredoxins have been found to regulate a variety of biological reactions in prokaryotic and eukaryotic cells.
Computational Description
thioredoxin H-type 1 (TRX1); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: cytosol; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937), Thioredoxin-like subdomain (InterPro:IPR006662), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: thioredoxin H-type 5 (TAIR:AT1G45145.1); Has 18017 Blast hits to 17697 proteins in 2965 species: Archae - 232; Bacteria - 9905; Metazoa - 1876; Fungi - 909; Plants - 1960; Viruses - 5; Other Eukaryotes - 3130 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G37017.1

Model type
Pseudogene
Curator Summary
Pseudogene of AT5G16486
Link
InterPro Scan - TAIR