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GT18719

CSHL Arabidopsis genetrap mutant lines

Original: GT18719

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT18719

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9964122 [Map]; Strand: c
      • AT4G17920.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -32; Region: promoter
      • AT4G17930.1 - [+] show detail - unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bac...
        Distance: -497; Region: promoter
    Flanking Genome Sequence: GT18719 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGC 
    CGTGAGACTT CTCATATACC AAAAAAAACA AGAAAGCGAG AGACAAGAGA 
    AATTCACTTA TTTCAAAGGT TATTTTAATT ATTAGAGTTC AGTTTTATTT 
    GGTATAGTGT GTGGAAAATG TGTGTTTGGT GTGAGAGAAA GAGTGTTAGG 
    GAAGTTTTGG TTACTAAAAA TAAAAAGTGT GTTTTGGGTT TGGTTATGTT 
    TGTTTGGGTT TGTTTGCTTA ATGCTATAGC ATTGAACGAG TCGTCTGTGA 
    CATTTGTTTA ACGTTAAGCC ACTTCGTCCT TAAAAATAGT TAAGTTTTTT 
    TTCTTTTTCT TTGGTTTTAA TAGTATATAA GTCTCGTTTC TAACAAGCAA 
    TAATTAGGA

AT4G17920.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G46650.1); Has 8779 Blast hits to 8757 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 2402; Fungi - 735; Plants - 4417; Viruses - 37; Other Eukaryotes - 1188 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G17930.1

Model type
Protein coding
Computational Description
unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR