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GT18706

CSHL Arabidopsis genetrap mutant lines

Original: GT18706

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT18706

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13855274 [Map]; Strand: c
      • AT4G27810.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18706 - 3-prime edge
    TATTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTAGCAG CAGCGGCTAT 
    TGGTGGAACG TGAAAACTCG AATCTACCCT CAGAGGCTCT TTCGCTTCTC
    CTTATCACTG ATAAAGACCG GCGAGGTACA TCGTAAGGCC CATCAAGAAC
    TGTGGTCGGA GATGGCTCAT CATCGGCTGG AAAAAATAGC CTCGGCGGAA
    GCTCAAGGCA CCGCACGACT CCTCCTCCTC CTTCTCNTCA CTCGACCAGN
    TTGGAAGCCA GCGGTTTGTT CTCATCAGAG ACGCGAGGTT TTCCCGGAGC
    TTCCTCCCAT AGAAAAGGTA CTGATCCAGC GATGTTCACA GGCGGCGTCG
    CTAGCCCTGG AGTGTCACAT GCTCTGTTAA ATGGAATCGA GAACAAAGGA
    AGCTTAGGAG TCGCACAAAA CCGTTCTTGA TCATCAAATT CAAAATCCAT
    CGCCTTGTTT TTCTGAATAA GAAACTTTCT TTGACGTTAT ATGAAATGGG
    TTGGGATTTA AATAGATAGA GACGGTATAT TTTGGTTTGA GTTATATGAA
    CACAAGAAAA GGGAAAAGAG AGGATGAATA ATGTGAGGAA GTGTGTAGTA
    TTTTATGAAG CTGAAAGAGA AAAATGAACA AAACGCTCCT TGTG
  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13855186 [Map]; Strand: c
      • AT4G27800.1 - [+] show detail - thylakoid-associated phosphatase 38
        Distance: -995; Region: promoter
      • AT4G27800.2 - [+] show detail - thylakoid-associated phosphatase 38
        Distance: -995; Region: promoter
      • AT4G27800.3 - [+] show detail - thylakoid-associated phosphatase 38
        Distance: -995; Region: promoter
      • AT4G27810.1 - [+] show detail - unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF6...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT18706 - 5-prime edge
    GACGGTGGCG GCGGTACAAC GGTGAAGATT AGTAGAGTTA GAAGAAAAGG 
    AAGCCTCTTG AATCTCTCTC ATTCCAAATC GCAATTCTTG GTAAGTTTTG
    AACACTCATC ACCTTTTCTA ACATCTTATT TTTAGCTGTC TAATTACACA
    CTCTTACCGG GTAGTTTACT AGTAACTAGC AAGTTAATCG TAGTCTTTTG
    TAGTCAAAGG TAGTCGATGA TTCAGAATTG CAAACACTAT AATTTTCGTT
    ATCAAAAAAA GGAAAATACA TTATTACGTT GTTCAAAGTA CCAACCGTTT
    TATCAAAAAT TTCAAACTTT ATTCAATGAT TTCTAACTCA AAACAAAACT
    TCAACATTTT TGGGATTTGA ATAAATGTCC CTTTTGATTA AAAAGTTTAG
    GTTTTCCCTT CAAAAGTCTT TGGTTACTCT ATATAGTATG GAGTGTTTTT
    TCAATATGCT TTGTTTTTTT CGGCTTGTGC ATATGAATTC ATTTTTAGGC
    TCATTTTGAT TACATAATAA TAAAATGCAG GCAAGGGTTT ACCAAGGATT
    TAAGCAAGTG ATCCCATGGA GGCGGAGACA AGANGATCTT CCACGGATGA
    GTTCTTCCAA TATTTAAATC AAATCTCTTC GATTTCTTTT ATAAATCATT
    AAAATCTTAG TTAATTTTAT AGACTAATAT TAATATCCAT CTGTATACAT
    ATTACCACAT ATTTTACAGA CATGAGGAAA AGTTTATTCT TAA

AT4G27800.1

Model type
Protein coding
Short Description
thylakoid-associated phosphatase 38
Curator Summary
Choroplast protein phosphatase TAP38/PPH1 is required for efficient dephosphorylation of the LHCII anthena and state transition from state 2 to state 1.
Computational Description
thylakoid-associated phosphatase 38 (TAP38); FUNCTIONS IN: phosphatase activity, protein serine/threonine phosphatase activity; INVOLVED IN: photosynthetic electron transport chain, photosystem stoichiometry adjustment, dephosphorylation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G31860.1); Has 5988 Blast hits to 5975 proteins in 460 species: Archae - 6; Bacteria - 321; Metazoa - 1365; Fungi - 680; Plants - 2480; Viruses - 9; Other Eukaryotes - 1127 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27800.2

Model type
Protein coding
Short Description
thylakoid-associated phosphatase 38
Curator Summary
Choroplast protein phosphatase TAP38/PPH1 is required for efficient dephosphorylation of the LHCII anthena and state transition from state 2 to state 1.
Computational Description
thylakoid-associated phosphatase 38 (TAP38); FUNCTIONS IN: phosphatase activity, protein serine/threonine phosphatase activity; INVOLVED IN: photosynthetic electron transport chain, photosystem stoichiometry adjustment, dephosphorylation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G31860.1); Has 5571 Blast hits to 5559 proteins in 320 species: Archae - 4; Bacteria - 52; Metazoa - 1347; Fungi - 659; Plants - 2426; Viruses - 9; Other Eukaryotes - 1074 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27800.3

Model type
Protein coding
Short Description
thylakoid-associated phosphatase 38
Curator Summary
Choroplast protein phosphatase TAP38/PPH1 is required for efficient dephosphorylation of the LHCII anthena and state transition from state 2 to state 1.
Computational Description
thylakoid-associated phosphatase 38 (TAP38); FUNCTIONS IN: phosphatase activity, protein serine/threonine phosphatase activity; INVOLVED IN: photosynthetic electron transport chain, photosystem stoichiometry adjustment, dephosphorylation; LOCATED IN: in 7 components; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein phosphatase 2C, manganese/magnesium aspartate binding site (InterPro:IPR000222), Protein phosphatase 2C-related (InterPro:IPR001932), Protein phosphatase 2C (InterPro:IPR015655), Protein phosphatase 2C, N-terminal (InterPro:IPR014045); BEST Arabidopsis thaliana protein match is: Protein phosphatase 2C family protein (TAIR:AT4G31860.1); Has 5546 Blast hits to 5534 proteins in 320 species: Archae - 4; Bacteria - 50; Metazoa - 1347; Fungi - 661; Plants - 2413; Viruses - 9; Other Eukaryotes - 1062 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G27810.1

Model type
Protein coding
Computational Description
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF688 (InterPro:IPR007789); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G53030.1); Has 73 Blast hits to 66 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 73; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR