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GT18493

CSHL Arabidopsis genetrap mutant lines

Original: GT18493

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT18493

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 9221868 [Map]; Strand: c
      • AT3G25430.1 - [+] show detail - Polynucleotidyl transferase, ribonuclease H-like superfamily protein
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT18493 - 5-prime edge 
    ACTTTCTCCC TGACAGAGCT GGAGAAGAAG AACAGTAACA GAATCAGCTA 
    ATATCGGATT CTCGGAAAGA AACTTCGATG CAGCCTCTTG TGCTCTAGAT 
    AAGTATGAGA TTCCTGTAAA ATGATTCAAT TAAGAGACCA GACTCCTCAA 
    AGAAACGAAA TGGAGATAGA GCAGAAAATA ATAAAACCTT CATAGATGCA 
    AATGTTGAAA TCAAATCCTT CTCTAGCCAT AGCTGTTAAA CGTGAAGCTT 
    GACAAGAGAA GCTATAAGAA GGCATACCAC ACTTCAATTC

AT3G25430.1

Model type
Protein coding
Short Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Computational Description
Polynucleotidyl transferase, ribonuclease H-like superfamily protein; FUNCTIONS IN: ribonuclease activity, nucleic acid binding; INVOLVED IN: RNA modification; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Ribonuclease CAF1 (InterPro:IPR006941), Polynucleotidyl transferase, ribonuclease H fold (InterPro:IPR012337); BEST Arabidopsis thaliana protein match is: Polynucleotidyl transferase, ribonuclease H-like superfamily protein (TAIR:AT1G55870.1); Has 339 Blast hits to 335 proteins in 120 species: Archae - 0; Bacteria - 10; Metazoa - 154; Fungi - 41; Plants - 69; Viruses - 0; Other Eukaryotes - 65 (source: NCBI BLink).
Link
InterPro Scan - TAIR