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Mutant Lines
GT18447

GT18447

CSHL Arabidopsis genetrap mutant lines

Original: GT18447

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT18447

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 5; Position: 3963420 [Map]; Strand: w
- AT5G12250.1 - [+] show detail - beta-6 tubulin
  Distance: 0; Region: exon1 (5UTR)

GACGTTACCG ACCGTTTTCA TCCCTACTCC GGTCGACGAT TATCCCAATC 
TCGCCGGGAT TCTCCTCTGC ACCGTGAGTT ATTGTTTACT CTGCTATTTC 
CTTTTTATGT ATTGTTTCCT CTCTAGGGAA TGAGATTATG AACTCCTACT 
ACTTATTGTG ATACTTTGAT CGAATCGTCT TCCTCCAAAT CTGTATCCGC 
TCTTGATCTG TTTCATATTT TCTCTCTTAA CTTGGATTTT GATTTTCTAT 
CACTTGAAAA TGTGTTGCCG TTTTGAATTC CGTGAAGAAT TTGAAATCGG 
AGTTTTCATC TTCACTCGA

AT5G12250.1

Model type: Protein coding
Short Description: beta-6 tubulin
Curator Summary: Encodes a beta-tubulin. Expression of TUB6 has been shown to decrease in response to cold treatment.
Computational Description: beta-6 tubulin (TUB6); FUNCTIONS IN: structural constituent of cytoskeleton; INVOLVED IN: microtubule-based process, response to salt stress, response to cold; LOCATED IN: microtubule cytoskeleton, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Beta tubulin (InterPro:IPR002453), Tubulin (InterPro:IPR000217), Tubulin/FtsZ, GTPase domain (InterPro:IPR003008), Tubulin/FtsZ, N-terminal (InterPro:IPR019746), Tubulin/FtsZ, C-terminal (InterPro:IPR008280), Beta tubulin, autoregulation binding site (InterPro:IPR013838), Tubulin, conserved site (InterPro:IPR017975), Tubulin/FtsZ, 2-layer sandwich domain (InterPro:IPR018316); BEST Arabidopsis thaliana protein match is: tubulin beta chain 3 (TAIR:AT5G62700.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link: InterPro Scan - TAIR