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GT17923

CSHL Arabidopsis genetrap mutant lines

Original: GT17923

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17923

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 522951 [Map]; Strand: c
      • AT2G02090.1 - [+] show detail - SNF2 domain-containing protein / helicase domain-containing protein
        Distance: -333; Region: promoter
    Flanking Genome Sequence: GT17923 - 3-prime edge 
    AACGGTAGAG GTATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACCA 
    GTATCCACCA TCCAACGAAA CACACTCTCA GATTCTTCCA CATTATGAAT 
    ACATGTCAAC CAACTAATTT CTCACCTCAA CCATCATTTC AAAACCAAAT 
    CTTCAAGCAA ACCCCATGGA TTTAAAAACC CTTTTCAAGT GCGTCAAACA 
    AACCACAAGC TTTTAGATTT GTCGAGAAAG TGAAGTCGTT GGGCCCATTT 
    CTTCGGATCC CTTAAGTTCA CCATTAAGTA CTCATTAGAG CCCATTTCTT 
    GGGGCCCATT AAGAGATTAA GTCCGCGCGC ATAGCTTTTG GAGGATGCCG 
    CTCTTTTGTA AGAAGCAACA CGTTGTTGAG TCTCTAACCT TTCTTTGAAA 
    TCTTGACCTT TCCCTTCCTT CTCCGCTAAA TTCGTTTTAA TTTCATCTTC 
    TTCTTCTCNT TTCAATTCGA TGCAATAATA GTCACTTCAA TCTCAATCTA 
    GGGTTTTCAA TTTTCTTCAT GTGAATTTTT TTTTT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 522897 [Map]; Strand: c
      • AT2G02090.1 - [+] show detail - SNF2 domain-containing protein / helicase domain-containing protein
        Distance: -387; Region: promoter
    Flanking Genome Sequence: GT17923 - 5-prime edge 
    CCTACTTTCT CCCTGGATAC TGGATAGGAG TCTTATAAGC TGGATATGTA 
    CATTGAGGGG TATGGTAATA GAGCTTTGGC TACGTTTGGA ATGTTGCGGT 
    AAAGATAACC TCGTCGTTCT CGATCTTAAT CCTCATTCTA CAGGTTATTA 
    TCATTTGTAT ATATATGTTT ACTAGCTAAT CCATTAACTC TGAAAATTAA 
    TATTAACTCT CGGAATGGCA GAAACAGAGT TGTTATTGAG TTTCTCTGAC 
    CTTGCCATCT TGGTGACGGC AGTTTCAAAT ATTAAATATT TCCATACAAT 
    TTTGGTCATC TTCAACTCGA CTAATGGCCG GCCCAAAAAC AACTGGGTCT 
    TGGGCTGTTT GTGGTATATC TCTCCTTATA TAGGCTCTTT TGTGTGCGTG 
    ACTGTGTGCT ATT

AT2G02090.1

Model type
Protein coding
Short Description
SNF2 domain-containing protein / helicase domain-containing protein
Computational Description
ETL1; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 5 (TAIR:AT2G13370.1); Has 19948 Blast hits to 16374 proteins in 2059 species: Archae - 127; Bacteria - 6550; Metazoa - 3755; Fungi - 4012; Plants - 1782; Viruses - 219; Other Eukaryotes - 3503 (source: NCBI BLink).
Link
InterPro Scan - TAIR