1. Home
  2. Mutant Lines
  3. GT17909

GT17909

CSHL Arabidopsis genetrap mutant lines

Original: GT17909

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT17909

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 522560 [Map]; Strand: w
      • AT2G02080.1 - [+] show detail - indeterminate(ID)-domain 4
        Distance: -853; Region: promoter
      • AT2G02080.2 - [+] show detail - indeterminate(ID)-domain 4
        Distance: -853; Region: promoter
      • AT2G02090.1 - [+] show detail - SNF2 domain-containing protein / helicase domain-containing protein
        Distance: -724; Region: promoter
    Flanking Genome Sequence: GT17909 - 5-prime edge 
    CTTTCTCCCT GGCAATGGGT CAGTGCCGGG CCATATTCAA TCAGGGCCTC 
    CCTGATTGGG TTGTAATATG ATTTCAAGTT AGTAATATGA AATAGCACAC 
    AGTCACGCAC ACAAAAGAGC CTATATAAGG AGAGATATAC CACAAACAGC 
    CCAAGACCCA GTTGTTTTTG GGCCGGCCAA CAAGAGACTT AGATGAACCA 
    AAATTGTATG GAAATATTTA ATATTTGAAA CTGCCGTCAC CAAGATGGCA 
    AGGTCAGAGA AACTCAATAA CAACTCTGTT TCTGCCATTC CGAGAGTTAA 
    TATTAATTTT CAGAGTTAAT GGATTAGCTA GTAAACATAT ATATACAAAT 
    GATAATAACC TGTAGAATGA GGATTAAGAT CGAGAACGAC GAGGTTATCT 
    TTACCGCAAC ATTCCAAACG TAGCCAAAGC TCTATTACCA TACCCCTCAA 
    TGTACATATC CAGCTTATAA GACTCCTATC CAGTATCCAC CATCCAACGA 
    AACACACTCT CAGATTCTTC CACATTATGA ATACATGTCA ACCAACTAAT 
    TTCTCACCTC AACCATCATT TCAAAACCAA ATCTTCAAGC AAACCCCATG 
    GATTTAAAAA CCCTTTTCAA GTGCGTCAAA CAAACCACAA GCTTTTAGAT 
    TTGTCGAGAA AGTGAAGTCG TTGGGCCCAT TTCTTCGGAT CCCTTAAGTT 
    CACCATTAAG TACTCATTAG AGCCCATTTC TTGGGGCCCA TTAAGAGATT 
    AAGTCCGCGC GCATAGCTTT TGGAGGATGC CGCTCTTTTG TAAGAAGCAA 
    CACGTTGTTG AGTCTCTAAC CTTTCTTTGA AATCTTGACC TTTCCCTTCC 
    TTCTCCGCTA AAATCGTTTA TTTCA

AT2G02080.1

Model type
Protein coding
Short Description
indeterminate(ID)-domain 4
Computational Description
indeterminate(ID)-domain 4 (IDD4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: intracellular, chloroplast; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT1G14580.2); Has 51298 Blast hits to 20221 proteins in 333 species: Archae - 2; Bacteria - 165; Metazoa - 48118; Fungi - 358; Plants - 855; Viruses - 7; Other Eukaryotes - 1793 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02080.2

Model type
Protein coding
Short Description
indeterminate(ID)-domain 4
Computational Description
indeterminate(ID)-domain 4 (IDD4); FUNCTIONS IN: sequence-specific DNA binding transcription factor activity; LOCATED IN: intracellular; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, C2H2-type (InterPro:IPR007087), Zinc finger, double-stranded RNA binding (InterPro:IPR022755); BEST Arabidopsis thaliana protein match is: C2H2-like zinc finger protein (TAIR:AT1G14580.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G02090.1

Model type
Protein coding
Short Description
SNF2 domain-containing protein / helicase domain-containing protein
Computational Description
ETL1; FUNCTIONS IN: helicase activity, DNA binding, ATP binding, nucleic acid binding; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021), SNF2-related (InterPro:IPR000330); BEST Arabidopsis thaliana protein match is: chromatin remodeling 5 (TAIR:AT2G13370.1); Has 19948 Blast hits to 16374 proteins in 2059 species: Archae - 127; Bacteria - 6550; Metazoa - 3755; Fungi - 4012; Plants - 1782; Viruses - 219; Other Eukaryotes - 3503 (source: NCBI BLink).
Link
InterPro Scan - TAIR