1. Home
  2. Mutant Lines
  3. GT17903

GT17903

CSHL Arabidopsis genetrap mutant lines

Original: GT17903

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT17903

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25424053 [Map]; Strand: c
      • AT5G63510.2 - [+] show detail - gamma carbonic anhydrase like 1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G63510.1 - [+] show detail - gamma carbonic anhydrase like 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17903 - 3-prime edge 
    AAACGGTAGA GGTTTTTACC GACCGTTACC GACCGTTTTC ATCCCTAATA 
    GCAATGGCGA CTTCGATAGC TCGATTGTCT CGGAGAGGAG TCACTTCTAA 
    CCTGATCCGT CGTTGCTTCG CTGCGGAAGC GGCGTTGGCG AGGAAGACAG 
    AGTTACCTAA ACCGCAATTC ACGGTGTCGC CGTCGACGGA TCGTGTGAAA 
    TGGGACTACA GAGGCCAACG ACAGATCATT CCTTTGGGAC AGTGGCTTCC 
    GAAGGTAGCC GTTGATGCTT ACGTGGCACC CAACGTTGTG CTGGCTGGTC 
    AGGTCACAGT CTGGGACGGC TCGTCTGTTT GGAACGGTGC CGTTTTGCGC 
    GGCGATCTCA ACAAAATCAC TGTTGGATTC TGCTCGAATG TACAGGAACG 
    GTGTGTTGTT CATGCCGCCT GGTCTTCCCC AACAGGTTAT TGCTTCCTTC 
    CTTCCATTTT CAAAAAAAAT TGTGTTCTGA TTATCCAATT TTTTGTATGG 
    AATCAAGACA ATGTTGATTG GGATTTAGGG GTTTTCATTG TCCATTTTCA 
    GTTATGAAAA GCTTATTGAA GAGTCGAGAA CTTATATGGA CAATTAAGTA 
    AATTGGTTCT GCATAATAGT GTTCTCTCGA GTACAGATTT TCTTGCTTGA 
    AGAATCGTCC AGTGAACTGT GGCTGTGGCT ATTGTTCTTA CTCTTTTGAG 
    CATAATGAGT TTTAACTTCG CCGAATATGT GTGTGGAAAC GTGTTGTTCT 
    TTAGGTGATT AGCATTACAG GAATCAAGAA ACTAACTGAA GATTGAGCTT 
    AATATTGAGA GTTGAATAGA TTAGCGTAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25423995 [Map]; Strand: c
      • AT5G63510.2 - [+] show detail - gamma carbonic anhydrase like 1
        Distance: 0; Region: exon1 (5UTR)
      • AT5G63510.1 - [+] show detail - gamma carbonic anhydrase like 1
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17903 - 5-prime edge 
    CTTTCTCCCT GATTGCTATG GATTTTGGAT TTCTTCAAGG ATTTGCAAAG 
    AGGAAAAGAG AGAGAGTGGT CGTCGAAAGA TTCACCTGAA ATTAAACGAG 
    ATACAGCATA TTGGGCTTTT TAACGGACCA CAGGCCCAAT AATAGTAAAA 
    CGTCGTCGTT TCACTTATTA GGTGGATGTA CATTAGGTGT CAAGTAGCAT 
    TTGAAAACCA AATTAAACCA GATCCCAAAC AAACTCTACA GATTGATACC 
    AGATTCAAAA ACAAAACTGG ATGTTGTATC ATTTGGTGAA ATTTTGATTA 
    TATTCACAAA TCCGAAAATG TTACAAACAA AACAAATCCA GACCTTACAA 
    TCAAATTGAA ATAAAACCAA GCAGCACCGG TTTGTCTGGC TAAACAGTTA 
    ACCGGAATAG ATGTGGACGT TTATGGCGAT GGTAAAGATA GTGATGAGAC 
    CAAAGAAAAT GATGGCGTGA ACGAGAATCG AAGCGCCACT CGTCTGCATA 
    TTACCGAATT CGACAACTCG ACCTCCCGCC GGAATCTGGA AAAGAAGCCC 
    CGGCGATAGA ACTACGAAGA GGATCACGGC GATCAACACT GGGCCCCAAT 
    CCGCCATAAC TTCTTGTCTT AAAGAGAGAA GAAATGAATT TGGAGAGAGA 
    AATAGAGAGT GGTGAAGGAG CTGGAGTATT TTTGGTTTTA GTTAGAGACG 
    AAGCTTCTCG TGTGATGTGA AAGCTAATGC TGTGGTGAAC CAATTGATGG 
    TATCCACGTG GACATACTTT AGGTTTATTA TAAAATTATT GTTTA

AT5G63510.1

Model type
Protein coding
Short Description
gamma carbonic anhydrase like 1
Curator Summary
Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.
Computational Description
gamma carbonic anhydrase like 1 (GAMMA CAL1); FUNCTIONS IN: carbonate dehydratase activity; INVOLVED IN: response to salt stress, photorespiration; LOCATED IN: mitochondrion, mitochondrial membrane, mitochondrial respiratory chain complex I, respiratory chain complex I, membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase-like 2 (TAIR:AT3G48680.1); Has 6342 Blast hits to 6315 proteins in 1761 species: Archae - 154; Bacteria - 4172; Metazoa - 13; Fungi - 12; Plants - 165; Viruses - 0; Other Eukaryotes - 1826 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G63510.2

Model type
Protein coding
Short Description
gamma carbonic anhydrase like 1
Curator Summary
Encodes a mitochondrial gamma carbonic anhydrase-like protein. Component of the NADH dehydrogenase complex.
Computational Description
gamma carbonic anhydrase like 1 (GAMMA CAL1); CONTAINS InterPro DOMAIN/s: Trimeric LpxA-like (InterPro:IPR011004); BEST Arabidopsis thaliana protein match is: gamma carbonic anhydrase-like 2 (TAIR:AT3G48680.1).
Link
InterPro Scan - TAIR