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GT17874

CSHL Arabidopsis genetrap mutant lines

Original: GT17874

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17874

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 10706071 [Map]; Strand: c
      • AT1G30340.1 - [+] show detail - transposable element gene
        Distance: 4678; Region: intergenic
      • AT1G30350.1 - [+] show detail - Pectin lyase-like superfamily protein
        Distance: 4008; Region: intergenic
    Flanking Genome Sequence: GT17874 - 3-prime edge 
    TAGACATATA AATCTCAAAT ATAACAGACA GTCTTTACAA AGTTGAATAT 
    TAATATTCTT TTATTGGTTT CATACAAATA ACTATAATTA TAAACAAAAC 
    ATTTAATGTA TTAATTTATA AATAAGATTA TCAAAGTAAT TCAAAATTAA 
    ATTTACTATC TATTGTAATT AGATATAGAG TATCTTTATT TTATAAAAAT 
    CATTTGTTGC TTAAAGAAAA AAGAAAAAAA AGTCCTCCGA TGTGAGATGT 
    TACTATTTTT AAATTAGTGA TCAATTTCCT TTTTGTAATG GTATTAAGAA 
    AAAGAGAAAG CATGCTAAAA TCAGAAATGA GAAGTTATTA TTAAAAACTT 
    TTCTTAACAC TTGTCTTGCT TTAATTGGTT TATGTTTTGT TTAAATTAGA 
    TTTTAAACAT ATAATTTTAA TTATATAAAG ATACTTACGA GAGGTTTTAA 
    ACAATGTAGA TGCTCTTAGT CTCCAAATAT TCACACAACT AGAGAAACCT 
    AACCTAACCT TCACTACTAG TAAAAGAGGA TGTAAACGAA GGAAAAAGAG 
    ACACATGAAT ACACACATAC ATCTCCGCTA AACAAATGCA TCGATTATGT 
    GTTGGCGGGA GCACATTTCT TATATTATTC CCTAATCAAA AATTTAGGTT 
    GAGAGTTGTA TTAGAAACAA TGAGAGAATA GAGGTGTGAT ACCACACTGT 
    TGTTATAATA GATGTATCGA ACATAGATGT TGAATAGAGA AATAACTACT 
    TATGCCTACA AAGAATCCGT CATCAACAAC

AT1G30340.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 0. P-value blast match to GB:CAA72989 open reading frame 1 (Ty1_Copia-element) (Brassica oleracea)
Link
InterPro Scan - TAIR

AT1G30350.1

Model type
Protein coding
Short Description
Pectin lyase-like superfamily protein
Computational Description
Pectin lyase-like superfamily protein; FUNCTIONS IN: lyase activity, pectate lyase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: petal, leaf whorl, sepal, flower; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Pectin lyase fold/virulence factor (InterPro:IPR011050), AmbAllergen (InterPro:IPR018082), Pectate lyase/Amb allergen (InterPro:IPR002022), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Pectin lyase-like superfamily protein (TAIR:AT1G11920.1); Has 1738 Blast hits to 1729 proteins in 284 species: Archae - 0; Bacteria - 793; Metazoa - 0; Fungi - 235; Plants - 697; Viruses - 0; Other Eukaryotes - 13 (source: NCBI BLink).
Link
InterPro Scan - TAIR