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GT17725

CSHL Arabidopsis genetrap mutant lines

Original: GT17725

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17725

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9964080 [Map]; Strand: w
      • AT4G17920.1 - [+] show detail - RING/U-box superfamily protein
        Distance: 0; Region: exon1 (CDS)
      • AT4G17930.1 - [+] show detail - unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bac...
        Distance: -539; Region: promoter
    Flanking Genome Sequence: GT17725 - 3-prime edge 
    ACCGTTACCG ACCGTTTTCA TCCCTAGTCT CCGGCCACCG TAATGTCGAC 
    ATAATTCCTT CATCTCTGGC GACGAAACCT CCGCAACAAC ATTACGTTAC 
    ACCGCCTCTC ACGGTGATCC TCACCGTAAT CCTCCTCGTT TTCTTCTTCA 
    TCGGTTTCAT CTCACTCGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9964155 [Map]; Strand: w
      • AT4G17920.1 - [+] show detail - RING/U-box superfamily protein
        Distance: -65; Region: promoter
      • AT4G17930.1 - [+] show detail - unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bac...
        Distance: -464; Region: promoter
    Flanking Genome Sequence: GT17725 - 5-prime edge 
    CCTACTTTCT CCCTGCCGGA GACTGAATAT CTCCGCCGTG AGACTTCTCA 
    TATACCAAAA AAAACAAGAA AGCGAGAGAC AAGAGAAATT CACTTATTTC 
    AAAGGTTATT TTAATTATTA GAGTTCAGTT TTATTTGGTA TAGTGTGTGG 
    AAAATGTGTG TTTGGTGTGA GAGAAAGAGT GTTAGGAAGT TTTGGTTACT 
    AAAAATAAAA AGTGTGTTTT GGGTTTGGTT ATGTTTGTTT GGTTTGTTTG 
    CTTAATGCTA TAGCATTGAA CGAGTCGTCT GTGACATTTG TTTAACGTTA 
    AGCCACTTCG TCCTTAAAAA TAGTTAAGTT TTTTTTCTTT TTCTTTGGTT 
    TTAATAGTAT ATAAGTCTCG TTTCTAACAA GCAATAATTA GGATTTAG

AT4G17920.1

Model type
Protein coding
Short Description
RING/U-box superfamily protein
Computational Description
RING/U-box superfamily protein; FUNCTIONS IN: zinc ion binding; CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, C3HC4 RING-type (InterPro:IPR018957); BEST Arabidopsis thaliana protein match is: RING/U-box superfamily protein (TAIR:AT5G46650.1); Has 8779 Blast hits to 8757 proteins in 280 species: Archae - 0; Bacteria - 0; Metazoa - 2402; Fungi - 735; Plants - 4417; Viruses - 37; Other Eukaryotes - 1188 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G17930.1

Model type
Protein coding
Computational Description
unknown protein; Has 2 Blast hits to 2 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 2; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR