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GT17560

CSHL Arabidopsis genetrap mutant lines

Original: GT17560

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17560

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1548586 [Map]; Strand: w
      • AT2G04460.1 - [+] show detail - transposable element gene
        Distance: 0; Region: exon1 (NonCoding)
    Flanking Genome Sequence: GT17560 - 3-prime edge 
    ACCGACCGTT TTCATCCCTA CTTATTGCTC TAGACGGATT GAGAAATTTT 
    TGAATTTATT TTAAAAACAA TTTCTAAATC TTCTAAAAAT AGTTTTGCTA 
    TTATCTTTGG GTGCTTACGC GGAAGGTGTA TCGAAGAACG GTTTTACTTC 
    TTTCTTTCTC CTCTTTCTAA CTGATTTGCA AACGCTACGT AGCGATTGTT 
    GTGGACAGTG TCTTATACAA ACATCTCTAG TTTCCACGAA CGCTCATAGT 
    TGAGTGAGTT TGTGAAACGT GAAACAAGTT TCTGCGAACG CTTCTTAAGC 
    TAGTTTGCAA AACTAATTCG GTGTAATTTA GTTGCCTGAA TTTTTTGGTT 
    AATATACTAA TTAGATCTGT TTTTCCGTGA ACAAAAGGAC TGGGATCAAC 
    ACCAACAGCG AGGTCGTTGA CACCCCCACA GTTCTTGAGA CTCCAGATGA 
    GATAGCTTTG CCTCTTGCGA AAG

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19573728 [Map]; Strand: w
      • AT2G47790.1 - [+] show detail - Transducin/WD40 repeat-like superfamily protein
        Distance: -701; Region: promoter
    Flanking Genome Sequence: GT17560 - 5-prime edge 
    CTTATATTAA TCATGACGAC GTTTTCTCAA GGGAGCAAAT TGTACGTTAC 
    GTCTCATATT ATCACCACTT TTTTGCAGCA ACACAGTTTT ATTTCACACA 
    ATACAACAAC ACTTTATATT ATATATGAGA GTGATAGAAT TTTATCATTC 
    CATATTTCCA TGATATAAAG GGTTCCAATA ATTGGTCCAA TTTTTCTAAT 
    AGACTTTTCT TATTCTCATA GACTCTTCTT ATT

AT2G04460.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
similar to unknown protein [Arabidopsis thaliana] (TAIR:AT2G10090.1); similar to pol polyprotein [Citrus x paradisi] (GB:AAK70407.1)
Link
InterPro Scan - TAIR

AT2G47790.1

Model type
Protein coding
Short Description
Transducin/WD40 repeat-like superfamily protein
Computational Description
Transducin/WD40 repeat-like superfamily protein; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), WD40 repeat 2 (InterPro:IPR019782), WD40-repeat-containing domain (InterPro:IPR017986), WD40 repeat (InterPro:IPR001680), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat, subgroup (InterPro:IPR019781); BEST Arabidopsis thaliana protein match is: Transducin/WD40 repeat-like superfamily protein (TAIR:AT2G43770.1); Has 11741 Blast hits to 7668 proteins in 457 species: Archae - 10; Bacteria - 2663; Metazoa - 3454; Fungi - 3073; Plants - 916; Viruses - 0; Other Eukaryotes - 1625 (source: NCBI BLink).
Link
InterPro Scan - TAIR