Home
Mutant Lines
GT17522

GT17522

CSHL Arabidopsis genetrap mutant lines

Original: GT17522

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17522

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 3; Position: 3533730 [Map]; Strand: w
- AT3G11280.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
  Distance: 0; Region: exon3 (CDS)
- AT3G11280.2 - [+] show detail - Duplicated homeodomain-like superfamily protein
  Distance: 0; Region: exon2 (CDS)

GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACTCCGG 
AGCCAAGGAC AAACGCAGGC CAAGTATCCA TGACATCACA ACCGGCAATC 
TTCTCAATGC CAATCTCAAC CGTTCCTTTT CCGATCATAG AGATATTCTC 
CCTGATTTAG GGTTTATCGA TAAGGATGAT ACGGAGGAGG GAGTAATATT 
TATGGGTCAG AATCTCTCTT CAGAAAATCT GTTTTCTCCA TCACCAACTT 
CATTCGAAGC TGCCATTAAC TTCGCCGGAG AAAATGTCTT CAGTGCCGGA 
GCTTAAGGCA ACATAGAATC CCCAAACTCA GCGTTCTTAA GAATCTGAGT 
TTTGAAACTG TAATTAGAGA AATATAAGCA AAACCAAGTT TATTATATAT 
GTATTGTGTG GTTTAAAAGT AAGAACTTGT TTTTACTCTG TATTTTTGTG 
TTTCTGTCTA CTAAATACCT GTTATGTTAA AAAAATCTGT GTTTTCTTTT 
CGATTAAATT ATAGACTTAT AGTTGTGAAA AAGAGTACTT GTGCTTTATG 
ACAAGTTGAT AACCCTAACA ATTTACCACA ATATATCTAT TTTATGGTGT 
TAAATGCAAA TTATAAAGAT ATACTGTAAT AAAGACTTAA AGAGATTAAA 
AAAAAAAAAA AAACCCCAAA GAATTCAACC CCCCCCCAAA ATGGAAAATT 
TTGGAAAACA GGTTTGGGGT AAAATTTTTT AAAAA

5 prime edge [+] show sequence

Chromosome: 3; Position: 3533797 [Map]; Strand: w
- AT3G11280.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
  Distance: 0; Region: exon3 (CDS)
- AT3G11280.2 - [+] show detail - Duplicated homeodomain-like superfamily protein
  Distance: 0; Region: exon2 (CDS)

CCCTGCTCCG GAGAGCTGTC TCTGGTAATA CTTTTGGGCG TGGCTCGCCA 
CTTGCGTTGG CGTCTTTGAC ACCACGAAGT TTCTCGATAT GTTTCTCCAA 
TCTCCTTTAC CGTACTTGAG TAGGCCTAAC AAGAATCTCC TGCAAGGAAC 
AAGAAACAGA GCATTGAAAA CCCTAAGAAA AAGGGGATGA CTTGCGTTGC 
AAGGAACCTA GGAAGAGTGA CTTATATGGA AAGAATTCTG TAGAGATGAA 
AGAGTGTCTT AACCTGTGTT CTTCCTCTGT CCAAGGGACT CCTTTCTTTC 
GATCTTGATC AGATCCTCTA GCTCCACTAG GCCGTTTACG ACACATGTCC 
GTGTCAAACC CCAAGGGAGA AGAAGCTGCA GGATAACCAG GAATGGGAAC 
ACGTCCTGCT TCAATATCGA AAACGTCTTC TTCAAGCTTA CTATATTGCT 
TCATAACATC AAAAACAGTC TTTCCAGGGA TCATGGAAGC AACTTTAAAC 
CAGCGATCAG GCGAGTCTTC AGCGTATATC GCAAGAGCTC GTTCGAACAT 
CTTGTTCTCT TCTTTAGTCC AGCTACCGCT ACTCGAGCTG TGTAAGCTCA 
CCATCTCTTG AACAACGAAC CGGTGGTCAG AGATAGGTAG GTGAGAGAAT 
GGATGCAGAG TCTCCATACC TAAA

AT3G11280.1

Model type: Protein coding
Short Description: Duplicated homeodomain-like superfamily protein
Curator Summary: Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational Description: Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT3G11280.2

Model type: Protein coding
Short Description: Duplicated homeodomain-like superfamily protein
Curator Summary: Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational Description: Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link: InterPro Scan - TAIR