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GT17520

CSHL Arabidopsis genetrap mutant lines

Original: GT17520

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT17520

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1228165 [Map]; Strand: c
      • AT2G03935.1 - [+] show detail - expressed protein, no suitable start codon could be identified. This may be ...
        Distance: 0; Region: exon2 (NonCoding)
    Flanking Genome Sequence: GT17520 - 3-prime edge 
    ACGGTAGAGG ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCCTGATCCC 
    AAACTCAGCC ACCAATTTCC GCTCTTTTGA TCCTACATTA ATTTATCAAC 
    GATCATATTT AAGTATGTAA TTATAAATGT AAATCGTTAT GCAAAATAAA 
    ACTTTTAATA TTAAACAAAC TAACCTTCCA TACAGATATG GTGATTTCAG 
    ATTGTTTACC TCGGAATACA GAGATAGGAG TAATGCTACC TCCAAGGACA 
    ATTCTGTTAC TGGTTTGTAT AAAACCAGGA CACAGAAGGT TGTAGCATCC 
    AGTTACGTTG TATGTGTCGC TCTAAACAAA GTTAGTATTC TTTTTATCAG 
    TAAACATTTC AAAGTCATGT TTTTTTGTCA ACATGTGAAA ATCATGTAAT 
    TGTACATTTC TTTATTTTAT ATGCATTAGA ATAAATATTA GCAAATGAAA 
    ATTTCAACTA ATTATGAATT GAGAATTGAT AAGGATAAGA GTTACTATTT 
    GCATTCTAGC TCGATTCTCT ATGAACTACA GATTTTCAAA TAATGTTCAC 
    ATTGTTC

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1228166 [Map]; Strand: c
      • AT2G03935.1 - [+] show detail - expressed protein, no suitable start codon could be identified. This may be ...
        Distance: 0; Region: exon2 (NonCoding)
    Flanking Genome Sequence: GT17520 - 3-prime edge 
    GTAGAGGCAT TTTACCGACC GTTACCGACC GTTTTCATCC CTATACACAC 
    ATTCGACCCG ACCGGATCGT ATCGGTATAT CANTTCTCAC TCGACACAAG 
    ATCATATTTA AGTATGTAAT TATAAATGTA AATCGTTATG CAAAATAAAA 
    CTTTTAATAT TAAACAAACT AACCTTCCAT ACAGATATGG TGATTTCAGA 
    TTGTTTACCT CGGAATACAG AGATAGGAGT AATGCTACCT CCAAGGACAA 
    TTCTGTTACT GGTTTGTATA AAACCAGGAC ACAGAAGGTT GTAGCATCCA 
    GTTACGTTGT ATGTGTCGCT CTAAACAAAG TTAGTATTCT TTTTATCAGT 
    AAACATTTCA AAGTCATGTT TTTTTGTCAA CATGTGAAAA TCATGTAATT 
    GTACATTTCT TTATTTTATA TGCATTAGAA TAAATATTAG CAAATGAAAA 
    TTTCAACTAA TTATGAATTG AGAATTGATA AGGATAAGAG TTACTATTTG 
    CATTCTAGCT CGATTCTCTA TGAACTACAG ATTTTCAAAT AATGTTCACA 
    TTGT

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 1228097 [Map]; Strand: c
      • AT2G03935.1 - [+] show detail - expressed protein, no suitable start codon could be identified. This may be ...
        Distance: 0; Region: exon2 (NonCoding)
    Flanking Genome Sequence: GT17520 - 5-prime edge 
    CTTTCTCCCT GTTTGGGATC CAACCTTCAT TGGTTGGATA TTGGCCAGCT 
    GAAATTTTCG TAAATTTAGC GTATGCAGAC GAGGTCCAAT GGAGTGGTGA 
    GATCGTTAAC TTACAAAGTT TGGGCCGTCA CACGACAACA GATATGGGTT 
    CTGGTCAATT CTCCGATGCA GTCTTCGGCA AGGTTGGGTA CTTTCACAAC 
    TTGGAGATTG TAGATGACAA CAGATTCCAG CCCATTCAAG ACATAACAGT 
    AAAAACAACC GACCGTAAGT TCTACGATGT TAAAGACATG TTTGAAGACG 
    ATTGGGGTAC TTATTTTTTC TATGGAGGGC CTGGACGGAT GCATTCAGGA 
    GTCTCTTCTT TAGCATTGAG TTCCTTTTAC TTTTACTTTA GTTTCATCAT 
    TATTTTTATC ATCTAGTT

AT2G03935.1

Model type
Pseudogene
Curator Summary
pseudogene similar to putative carboxyl-terminal proteinase
Computational Description
expressed protein, no suitable start codon could be identified. This may be a pseudogene.
Link
InterPro Scan - TAIR