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GT17516

CSHL Arabidopsis genetrap mutant lines

Original: GT17516

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17516

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 30383424 [Map]; Strand: c
      • AT1G80840.1 - [+] show detail - WRKY DNA-binding protein 40
        Distance: -267; Region: promoter
    Flanking Genome Sequence: GT17516 - 5-prime edge
    TTTGGTCCAA TCTTTAGTCC CAATTTTGTT CAAGAAAAAC ATATTGGAAA 
    CATATGAAAT GTATTCTTGA TTTTAATTTT GGATAGTTGG TTGACATTCT
    TATTTTTTTT GTTAAACAAA CATTTGGTGT GTGATTGGCC TACTAATAAT
    ATGACGCTCT CCACGTTTGT TTTTAATTTT GGATAGTTGG TTGACATTTC
    TGTCGGGTTA GTTGCTTTTA TTTATTTTTC GTTATAGCAT AGCCGGCCTA
    AACTCAAGGT TAATATTTTC AGAATATGTA GTTTTGTAAT TCAAGACATC
    CATCAAGAAC TCACCCAAAA AGAGTAAAAA TAATCAAGAA TTGTTAAACA
    AGCCTAATGT GTAATTAAAT ACATATGTTG TATATCATCT TAGATTTTTC
    AGACAATAAT TATGTTGTTT AGATAACTTG ATGCATGGAG TGACAAAAAA
    AAAGATAACT TGATGCATAA AGTCATAAAA TCAGGACTAC AAATGACATG
    TGGAATAAAA GAAATGGTTG ATTACATGTA TAATAATAAT GAAATGTAGT
    AAAGGCGTGC TTAATTA

AT1G80840.1

Model type
Protein coding
Short Description
WRKY DNA-binding protein 40
Curator Summary
Pathogen-induced transcription factor. Binds W-box sequences in vitro. Forms protein complexes with itself and with WRKY40 and WRKY60. Coexpression with WRKY18 or WRKY60 made plants more susceptible to both P. syringae and B. cinerea. WRKY18, WRKY40, and WRKY60 have partially redundant roles in response to the hemibiotrophic bacterial pathogen Pseudomonas syringae and the necrotrophic fungal pathogen Botrytis cinerea, with WRKY18 playing a more important role than the other two.
Computational Description
WRKY DNA-binding protein 40 (WRKY40); CONTAINS InterPro DOMAIN/s: DNA-binding WRKY (InterPro:IPR003657); BEST Arabidopsis thaliana protein match is: WRKY DNA-binding protein 18 (TAIR:AT4G31800.2); Has 3306 Blast hits to 2859 proteins in 187 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 3292; Viruses - 0; Other Eukaryotes - 14 (source: NCBI BLink).
Link
InterPro Scan - TAIR