1. Home
  2. Mutant Lines
  3. GT17497

GT17497

CSHL Arabidopsis genetrap mutant lines

Original: GT17497

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17497

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13254862 [Map]; Strand: c
      • AT4G26150.1 - [+] show detail - cytokinin-responsive gata factor 1
        Distance: 0; Region: exon3 (3UTR)
      • AT4G26160.1 - [+] show detail - atypical CYS HIS rich thioredoxin 1
        Distance: -389; Region: promoter
    Flanking Genome Sequence: GT17497 - 3-prime edge 
    TTTACCGACC GTTACCGACC GTTTTCATCC CTAGAAAGGC TTGTATTTTA 
    TTTTTTATGG AACTTGATAT CCCAACAATG TGGTTGTTCT TGTCTCTCCA 
    CAAGTTTTTT GTGTTTCTAA GTTTTGAGAG TTGATATAAG AATTACTTTA 
    ATTTGTCAAG ATCTCGTCAA GTGATTATAC TTGATGAAAA TCTTTTTGGG 
    ATCAAAACGG TTTGAAGTAA AGATCGTACT GTCGTACTGG TGTCTGTAGA 
    TTGATATTAA ACTCGAACAA CATGATTATT GTAATATACC TTAACTACCA 
    TATAATTTTT TTCAATTCTT TCTGGATACA ATTGTAAGAA AACAGAAAAA 
    TCGGAAAAAT GAGAAAATTC ACCAAAACTA ATGGGGTTGT TTTGAAATTA 
    GTTTGATACT TGAGGATTGA CAAACGAATT CTACTTTTCC GGGGAAAGAA 
    TTAGAGAGCG AAACAGAACA AAACAAACAA AAAGTCATGT CTCCGACGAC 
    GACATCGTTA CGATCCCTAA GCTTCTCGCT TTACGCTTCT TCTAATTCTA 
    CTCCGATTTC TACACCAATT GAGGCCCGAC AGTTACTGAG TTCATGCAAT 
    AGATTCTACG GTCTGTCCTC TTCGAGCTCT TCTTCCTCCC TTACTACT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13254762 [Map]; Strand: c
      • AT4G26150.1 - [+] show detail - cytokinin-responsive gata factor 1
        Distance: 0; Region: exon3 (3UTR)
      • AT4G26160.1 - [+] show detail - atypical CYS HIS rich thioredoxin 1
        Distance: -489; Region: promoter
    Flanking Genome Sequence: GT17497 - 5-prime edge 
    TTCCTCCTAA CCCACACTCT CTTATAATAA AGTTGGACTG AGTGAAATTA 
    ATATATCACC GCAACAAAAT TTCATGTATC AAATAATCTA GATATTACTA 
    GCTATGAGGG CTTATGGTAT GGTTTATATT TTATTTCTTA AGCATGCGAG 
    TTATAATTAA AATACTTAAA ATAATCACCC GTGAACCATT CCGTGCGATA 
    GAGCCATTAG TAAAATGGCA GCCTCCTTCT CATCTTGAGG GAAAACTTGC 
    TGATAAGCTG AACTTTTGCT CAACAGTAAT GCTAGATCAT CGAAATAGAT 
    ATTGTCTGAA GATGATAACA TCGTGGAGTT GCTCTGGGTC TCCAAATCCT 
    CGGCTAATGC GGTCTCCTCT AGTGTGATCA TTCTCTTACA CGTGTTTACC 
    TTTAGGGGCA AAGGAGATGA GATTTTATAA ACTCCATTTG ATATCTTGTT 
    CTTGT

AT4G26150.1

Model type
Protein coding
Short Description
cytokinin-responsive gata factor 1
Curator Summary
Encodes a member of the GATA factor family of zinc finger transcription factors.
Computational Description
cytokinin-responsive gata factor 1 (CGA1); CONTAINS InterPro DOMAIN/s: Zinc finger, NHR/GATA-type (InterPro:IPR013088), Zinc finger, GATA-type (InterPro:IPR000679); BEST Arabidopsis thaliana protein match is: GATA type zinc finger transcription factor family protein (TAIR:AT5G56860.1); Has 1630 Blast hits to 1587 proteins in 190 species: Archae - 0; Bacteria - 0; Metazoa - 106; Fungi - 659; Plants - 751; Viruses - 0; Other Eukaryotes - 114 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26160.1

Model type
Protein coding
Short Description
atypical CYS HIS rich thioredoxin 1
Curator Summary
Encodes a member of the thioredoxin family protein. Located in the chloroplast. Shows high activity towards the chloroplast 2-Cys peroxiredoxin A, and poor activity towards the chloroplast NADP-malate dehydrogenase.
Computational Description
atypical CYS HIS rich thioredoxin 1 (ACHT1); FUNCTIONS IN: oxidoreductase activity, acting on sulfur group of donors, disulfide as acceptor; INVOLVED IN: cell redox homeostasis; LOCATED IN: chloroplast membrane, chloroplast, chloroplast stroma; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Thioredoxin, core (InterPro:IPR015467), Thioredoxin-like (InterPro:IPR017936), Thioredoxin-like fold (InterPro:IPR012336), Thioredoxin domain (InterPro:IPR013766), Thioredoxin, conserved site (InterPro:IPR017937); BEST Arabidopsis thaliana protein match is: atypical CYS HIS rich thioredoxin 2 (TAIR:AT4G29670.1); Has 10552 Blast hits to 10444 proteins in 2239 species: Archae - 117; Bacteria - 5303; Metazoa - 1388; Fungi - 716; Plants - 1267; Viruses - 3; Other Eukaryotes - 1758 (source: NCBI BLink).
Link
InterPro Scan - TAIR