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GT17488

CSHL Arabidopsis genetrap mutant lines

Original: GT17488

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17488

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13383105 [Map]; Strand: w
      • AT4G26500.1 - [+] show detail - chloroplast sulfur E
        Distance: 0; Region: exon1 (CDS)
      • AT4G26510.1 - [+] show detail - uridine kinase-like 4
        Distance: -957; Region: promoter
      • AT4G26510.2 - [+] show detail - uridine kinase-like 4
        Distance: -957; Region: promoter
    Flanking Genome Sequence: GT17488 - 3-prime edge
    GCTTTCTTTG ATGAGGAACG TAATGTTGTG TATGAAGCTG ATTCTGATTC 
    GGTTCTCACT AAAGGGTTAG CTGCTCTATT AGTCAAGGGT TTATCTGGAA
    GACCTGTCCC TGAGATTTTG AGGATAACAC CCTGATTTC

AT4G26500.1

Model type
Protein coding
Short Description
chloroplast sulfur E
Curator Summary
Sulfur acceptor that interacts with and activates the cysteine desulfurases, AtSufS in plastids and AtNifS1 in mitochondria, and both activations are vital during embryogenesis. Dual localization in mitochondria and chloroplasts. Involved in Fe-S cluster biogenesis in mitochondria and plastids. Expressed in all major tissues, with higher expression in green parts. Its expression is light-dependent and regulated at the mRNA level. Activates the cysteine desulfurase activity of CpNifS for chloroplastic iron-sulfur cluster biogenesis.
Computational Description
chloroplast sulfur E (CPSUFE); FUNCTIONS IN: enzyme activator activity, transcription regulator activity; INVOLVED IN: iron-sulfur cluster assembly, embryo development ending in seed dormancy; LOCATED IN: mitochondrion, chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Fe-S metabolism associated SufE (InterPro:IPR003808), BolA-like protein (InterPro:IPR002634); BEST Arabidopsis thaliana protein match is: BolA-like family protein (TAIR:AT1G55805.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26510.1

Model type
Protein coding
Short Description
uridine kinase-like 4
Curator Summary
One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.
Computational Description
uridine kinase-like 4 (UKL4); FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: uridine kinase-like 3 (TAIR:AT1G55810.3); Has 12621 Blast hits to 12607 proteins in 2610 species: Archae - 215; Bacteria - 9586; Metazoa - 520; Fungi - 503; Plants - 574; Viruses - 2; Other Eukaryotes - 1221 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G26510.2

Model type
Protein coding
Short Description
uridine kinase-like 4
Curator Summary
One of the homologous genes predicted to encode proteins with UPRT domains (Uracil phosphoribosyltransferase). Five of these genes (At5g40870, At3g27190, At1g55810, At4g26510 and At3g27440) show a high level of identity, and are annotated as also containing a N-terminal uracil kinase (UK) domain. These genes are referred to as UKL1 (UK-like 1), UKL2, UKL3, UKL4 and UKL5, respectively.
Computational Description
uridine kinase-like 4 (UKL4); FUNCTIONS IN: uracil phosphoribosyltransferase activity, phosphotransferase activity, alcohol group as acceptor, kinase activity, ATP binding; INVOLVED IN: biosynthetic process, metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Phosphoribulokinase/uridine kinase (InterPro:IPR006083), Uridine kinase (InterPro:IPR000764); BEST Arabidopsis thaliana protein match is: uridine kinase-like 3 (TAIR:AT1G55810.3); Has 12683 Blast hits to 12669 proteins in 2628 species: Archae - 216; Bacteria - 9646; Metazoa - 520; Fungi - 504; Plants - 574; Viruses - 2; Other Eukaryotes - 1221 (source: NCBI BLink).
Link
InterPro Scan - TAIR