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GT17404

CSHL Arabidopsis genetrap mutant lines

Original: GT17404

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT17404

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3526319 [Map]; Strand: c
      • AT3G11250.1 - [+] show detail - Ribosomal protein L10 family protein
        Distance: 3318; Region: intergenic
      • AT3G11260.1 - [+] show detail - WUSCHEL related homeobox 5
        Distance: -1256; Region: intergenic
    Flanking Genome Sequence: GT17404 - 3-prime edge 
    AGACGGTGGA GGGTTTTACC GACCGGTACC GACCGGTTTC ATCCCTAGAT 
    TTTAACTAAG AAATAAAATT TTGACCAAAG CATTTACAGT ATAATGCATG 
    ATTTATGTTA CTATTGCTGC TGTCTCATTT TCAGATTTTA AAAATCAGAT 
    CTAATTGACG TGATAGCATA TAGAGGCTAG TAAAACACTA TGAGTTTATA 
    CTTTTATTGA TGGTTAAAAT TATTTTTACA TCTTGCAGTC ATCTTTCAAC 
    CATTCTTCAT TCTAGAAGGA GTTCTTGGTG ACTTAATAAA TGGCTTTTTA 
    CAAATATTTT GGTGTAGGAC TTATATTATA CATGTGTGTG GCGAACCTTC 
    TGGTTCTATC TATTAAATGC CTTTTCTTTT TGTAGTTTTT TATGATTCAG 
    AATTCAGATA TTTGATTTTG TAATATTATA TTTTCTTATA AAAGAGAATA 
    AAATTTCAAA TTTCCTGTCT ACACTTGCCG ACCAACGTTC CTCAAGTGTC 
    ACATCTTCTG TGCAAGAGAG ACAAAACTAC AATCTGTTCA CACAATGTCA 
    TGATGTTTAT

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3526261 [Map]; Strand: c
      • AT3G11250.1 - [+] show detail - Ribosomal protein L10 family protein
        Distance: 3260; Region: intergenic
      • AT3G11260.1 - [+] show detail - WUSCHEL related homeobox 5
        Distance: -1314; Region: intergenic
    Flanking Genome Sequence: GT17404 - 5-prime edge 
    CTTTCTCCCT GTTAAAATCT AACTGCATTC TAGTATATAA CCTGCGACCG 
    AAAAAATATT TCACTTTTAA GCGTACAACT CATACATGCC TCAGTTTTAA 
    CAATATACAA TCCAGCTCTT ATAATTTTGC ATAGTCTAGT TGTTTGTACA 
    AGAAACTTAT TGATGTCTAT ATGAACAGTA CGTATGACAC CAGCAGAAAT 
    AGAAAGGAAA AACTTATAAT ATTCATGTAG TGTGCGTTAA AATGTCTTAA 
    TAGTGAGGAT TTAGATGAGA CATGCACGGG ATGCTAAGCA AGACGAAAAT 
    GGTCCAAATA ATAAAATGAC AATGTGAATA AAACCAAACA TTGTTTTTAT 
    AAACAAAGTA CTCTTCACTA GACAACATAA CAGTACTTAC AAATAT

AT3G11250.1

Model type
Protein coding
Short Description
Ribosomal protein L10 family protein
Computational Description
Ribosomal protein L10 family protein; FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: translational elongation, response to salt stress, translation; LOCATED IN: cytosolic ribosome, ribosome, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein 60S (InterPro:IPR001813), Ribosomal protein L10 (InterPro:IPR001790); BEST Arabidopsis thaliana protein match is: Ribosomal protein L10 family protein (TAIR:AT3G09200.1); Has 1983 Blast hits to 1980 proteins in 500 species: Archae - 322; Bacteria - 1; Metazoa - 680; Fungi - 420; Plants - 226; Viruses - 0; Other Eukaryotes - 334 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11260.1

Model type
Protein coding
Short Description
WUSCHEL related homeobox 5
Curator Summary
Arabidopsis thaliana WOX5 protein mRNA
Computational Description
WUSCHEL related homeobox 5 (WOX5); CONTAINS InterPro DOMAIN/s: Homeobox (InterPro:IPR001356), Homeodomain-like (InterPro:IPR009057); BEST Arabidopsis thaliana protein match is: WUSCHEL related homeobox 7 (TAIR:AT5G05770.1); Has 538 Blast hits to 538 proteins in 47 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 538; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR