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GT17345

CSHL Arabidopsis genetrap mutant lines

Original: GT17345

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17345

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 2595966 [Map]; Strand: w
      • AT4G05071.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: -1669; Region: intergenic
      • AT4G05073.1 - [+] show detail - transposable element gene
        Distance: 1692; Region: intergenic
    Flanking Genome Sequence: GT17345 - 3-prime edge 
    ACGGTAGAGG ATTTTACCGA CCGTTACCGT CCGTTTTCAT CCCTAATTGC 
    TACGACCACT TGTTATATAT GGAATCTTGT CCTCGTTTTT AATCTTGTGG 
    GTTCAAACTA AAAGCAAAAC TGAAATTATG TGGCCTAGAT GGAAACATCG 
    GTCGGATCCA GAAACGGAAA GGGTTGGGGA TTTAGGGACC TACACAATTC 
    CTCCATAATC CAAATCATTT CCTCTCAAGA GTGTTGCGAA GTCGGTATTA 
    CATGGAGAGA CTCTGCAAAT CCTCGGCCAA AAGCATATTT ATTTAGGATG 
    GTGATGCATT ACTACCTTTC TAGCTAGCAA TGGAGACTTC GCAGATAAAG 
    AATAATCTAA TTATAAACCG TAAAATATGG GAACCTTTTG GATTAAATCC 
    ACAAGAGTAA ATAAAATAGT TGCAAGCTAC TCGAATATGT GACAACTTGC 
    ATACTTTACC TAAACTACCA TCACCATCAC GAGTCACGAC CAAACACCAT 
    CAAATGGATG ATACAAATCT AATTATACGA TGGCATTTTC CATCGTGGTG 
    GTCTACATAT AAGCTCGGGT TTTATTGTAT GAGATGAAAG AGGTTATTAC 
    CTGCTTATTA TAAGCTTTTG GCTCTGTACG TAGAACACTT ATGGTGTAGA 
    GAATCCGATA GATAATCATG GGGATAAATT CTAAACAACC TATAAAATTG 
    ATCAACAATA TGCATACAGC AACAAATATA CATAAAAGGA AAACAACTCA 
    GTGGCAGACA AGCTTGGACC CAAATTCTTT TTTCTATTG

AT4G05071.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G05073.1

Model type
Transposable element gene
Short Description
transposable element gene
Computational Description
copia-like retrotransposon family, has a 5.1e-300 P-value blast match to GB:CAA31653 polyprotein (Ty1_Copia-element) (Arabidopsis thaliana)
Link
InterPro Scan - TAIR