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GT17340

CSHL Arabidopsis genetrap mutant lines

Original: GT17340

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17340

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 9536 [Map]; Strand: w
      • AT4G00020.2 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron3 (CDS)
      • AT4G00020.1 - [+] show detail - BREAST CANCER 2 like 2A
        Distance: 0; Region: intron3 (CDS)
    Flanking Genome Sequence: GT17340 - 3-prime edge 
    CTTCCAGGTT CTTGAGTTTG GTTGTTATCA GATGAAATGA TGAATAGTGA 
    AGAACTAATC AACACACATC TTACTTCGTT TAGAGGATGA ATATTAGAAG 
    TGACATTTTT TCATAGTTTA TTTGTTAATA AGATTCTTTT TGATTGTGTA 
    GACAACGTTC TTCCCAGGGA GAGTGGATTT GGAGTTTCCA ACAGTCTTTT 
    TCTGACAGCT TCCAACAAAA AGGTTAATGT ATCTTCTGCC GGTTTAGCAA 
    GGGCCAAGGC ATTGTTAGGA CTAGAAGAAG ATGATTTGAA TGGATTTAAC 
    CATGTGAACC AGTCGTCTTC TTCCTCCCAG CAACAGGGTG GTCCGGATTT 
    AAAACTCCAT GA

AT4G00020.1

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00020.2

Model type
Protein coding
Short Description
BREAST CANCER 2 like 2A
Curator Summary
Ortholog of breast cancer susceptibility protein 2. Essential at meiosis. Interacts with either AtRad51 or AtDmc1 and ATDSS1(I). Involved in embryo sac development.
Computational Description
BREAST CANCER 2 like 2A (BRCA2(IV)); FUNCTIONS IN: single-stranded DNA binding; INVOLVED IN: meiosis, embryo sac morphogenesis, embryo sac development, embryo development ending in seed dormancy; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), DNA recombination/repair protein BRCA2, helical domain (InterPro:IPR015252), DNA recombination and repair protein, BRCA2 (InterPro:IPR011370), Breast cancer type 2 susceptibility protein (InterPro:IPR015525), BRCA2, oligonucleotide/oligosaccharide-binding 1 (InterPro:IPR015187), BRCA2 repeat (InterPro:IPR002093); BEST Arabidopsis thaliana protein match is: BRCA2-like B (TAIR:AT5G01630.1); Has 319 Blast hits to 211 proteins in 92 species: Archae - 0; Bacteria - 11; Metazoa - 140; Fungi - 22; Plants - 61; Viruses - 0; Other Eukaryotes - 85 (source: NCBI BLink).
Link
InterPro Scan - TAIR