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GT17308

CSHL Arabidopsis genetrap mutant lines

Original: GT17308

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT17308

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12818078 [Map]; Strand: c
      • AT4G24910.1 - [+] show detail - Protein of unknown function (DUF579)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17308 - 3-prime edge 
    GGTAGAGGTA TTTTACCGAC CGTTACCGAC CGTTTTCATC CCTACCCAGG 
    AGAGCCACTT TTCAGCTGTC CTGTGCACAT CATGCACGAA AACATCTGTT 
    GTTGAGTTGC TACTTCCTTT TCTTGCTAAC ACAGCTGCAG TATATATACT 
    CCCCATCCTA CCTGGTGTCT CTAAGTCATC TCCACGGGGG CCATCAACAA 
    CTATCACATC CCATTTGGTA TTGTGTACCT GCTGTGGCAA ATCCCTCAGT 
    TCCAGTTTGC AGTCTGATGA GCCTTGATGT TGATTATTCA TATTTGGTGC 
    ACATGCGGGA TTAGCTCGAG CATGTTGAAG CAGATTGTAA GCATTTCTTA 
    CTTCCATCTG ATGGTACTTT AAGCTGTAGA TTCTTGTGTT GTTTGGATTT 
    ACTTCAGCTT TTGGTATCAT TATCTTTGCA GGTTCATCTT TCCAGAATGA 
    CGGTAATACC TCTAGTGTTG ATTGAAGATA ACATGAGGTA TTGAGGTGCA 
    AACCCGAAAA CAAGAATGTT ACAAGGGGAT CTACGAGTAA CGGTATCTGA 
    TAAGAGCTTC AGTTCCTTTT CCGTGAGAGC GGTTGGGCCC TCATTAGCCC 
    TGAGCTGCTG ACTGGAATCA GCTGGACTCA AGCGAAATGT GGTTGAAGAG 
    GACTGGGACT TAGAAGATGA AGACTTGTAT GAAATCCGGA GGA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 12818017 [Map]; Strand: c
      • AT4G24910.1 - [+] show detail - Protein of unknown function (DUF579)
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT17308 - 5-prime edge 
    CTTTATCCCT GCTCCTGGGA GTTCTTGTGC CAGGAGAATC TGGTTTCAGC 
    TAAAGGAACC TTCTGGAAGT TTAGGATCAA GCGTCAATCA AATGCATCCA 
    GGTTTTGCTC ACCAGAAACA GTCATCATCA GATAATAGCT AAATTTTGTA 
    CATTTAATCA AGAGCAACAA TGTTACTCCC TTAGTTCTAC ACACTACTGT 
    GTCTTAATCT CATACCACCG TAGGGAAATA TTCGAATTAA AGTCATTTAG 
    TGTACAAATG TCATTCTAAA TATGTGTATC CAACTAGAAA ATAGATACAG 
    TTTGTTGAGA TGGCCACAAT CTATGAACCA CACAACAAAG TTATTTCACT 
    TTATCTCCCC GCAGAAAAAG AAACATCAGA TGAAAAGATA TACATCTTTC 
    TTAAGATGAA GAACCCAAAG GAAGATCAGA TAGTGGAGAA AGGCCTTCTC 
    CATGCTATAT TTTACTACTG CATATGCTAC GTAAAACTCT AACCCTTTAA 
    AATCTCTCGT ACCAAAAACA AAATTTTATC CATTTTTTAC ACTACTTGAA 
    AGGAGTCCCA GGATCACATA CTTCTAAATT CTATCATAGC TCAACATGAA 
    AACAAGATAC ATTTGAGTAG GATCTCCAGG AAACGAGGAT TATAAAATTC 
    CTACATGAGA TAATCCTTAC TAGTTGCCAT TCTGGATGTC AGCCACCGCC 
    ATTACTCACC ACTCTCTCTT CTCTGCAATC ACAATTAATG TATATACATA 
    AGGCCACTGA ACAGTATTTC TCGAA

AT4G24910.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF579)
Computational Description
Protein of unknown function (DUF579); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF579 (InterPro:IPR021148), Conserved hypothetical protein CHP01627 (InterPro:IPR006514); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF579) (TAIR:AT5G67210.1); Has 253 Blast hits to 252 proteins in 21 species: Archae - 0; Bacteria - 5; Metazoa - 1; Fungi - 0; Plants - 241; Viruses - 0; Other Eukaryotes - 6 (source: NCBI BLink).
Link
InterPro Scan - TAIR