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GT17197

CSHL Arabidopsis genetrap mutant lines

Original: GT17197

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT17197

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 607886 [Map]; Strand: c
      • AT3G02800.1 - [+] show detail - Tyrosine phosphatase family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17197 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCTCCC AAGGATCCTT 
    CCTTCCTTTG TTGATTTGCT TAGAAAACCT TAAATGGATT TTAGGGTGGA 
    CCTCACTTCA GGAATCTCCA AGATCCTGAC ACGTGTCGTT TTCTCTGCTT 
    TTATTTGACC TCATAGCTGA CGATTCTTTA CGAATCTAAT TTGGGTCAAT 
    CCTGTAAACA TTATCTAATT TTGATTAAAA TAAATATTCT TAGAAAGTAT 
    AGTGGTCGAA TCATGAAAGA AAAGTAAAAC TAAGTGGTCT CATTTAAAAA 
    TTTTGATTCC ACAGACTGAA ACTTTTGACA AGTGTCGTTG ACAAAAAGAT 
    GGAAAACACA AAGACTATCC TTAATTGCAA AAATAGGATA AGAAGTAGAT 
    ATGTCTTTTA TCTATCAGTT TAAGTATCTA CTTTAGTATA TCCAAATTGA 
    GAATCTAATA ATTTCCATTT CCTATGAATA ATGTAATATT TGCTCATAGG 
    CTATATGAGT CACAGCTAAG ATTGATTATT AAGATTCTTA TCTAGGGTTT 
    GATTATCTCA TACTTGTTTT TCTTTAAAAT GCTAAACTAT TATTATTTCA 
    TCTACTATTT AAAGAAAGAT CCACAAGTAC ATAAACATTT TTTTTTAAAG 
    GATTACAAAA GCTGAGATAA GTTTTCTCAA TCAGATTATC TGATTATACA 
    ACTTGTTTCT TTATTAATCT ATCAATCCAA AACATCTTCA TCATGTATAA 
    AGAGAGATGG TTATAATTTG TTAAGAAAAA CCGTCAATAT GTATCTTATT 
    T

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 607819 [Map]; Strand: c
      • AT3G02800.1 - [+] show detail - Tyrosine phosphatase family protein
        Distance: 0; Region: exon1 (5UTR)
    Flanking Genome Sequence: GT17197 - 5-prime edge 
    CTACTTTATC CCGATCCTAC AGAGGCTCCC AAATCTGAGT CCGCTTTTCA 
    AAGTTGTCTC CTTTATGAAC CCCACTTGAT CCCTTCTCCT CCTATAAAAA 
    CATCTTCATC TCACTCGA

AT3G02800.1

Model type
Protein coding
Short Description
Tyrosine phosphatase family protein
Computational Description
Tyrosine phosphatase family protein; FUNCTIONS IN: phosphatase activity, protein tyrosine phosphatase activity, phosphoprotein phosphatase activity; INVOLVED IN: dephosphorylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein-tyrosine phosphatase, active site (InterPro:IPR016130), Protein-tyrosine phosphatase, dual specificity phosphatase, eukaryotic (InterPro:IPR020428), Protein-tyrosine phosphatase, SIW14-like (InterPro:IPR004861); BEST Arabidopsis thaliana protein match is: Phosphotyrosine protein phosphatases superfamily protein (TAIR:AT5G16480.1); Has 721 Blast hits to 711 proteins in 161 species: Archae - 0; Bacteria - 73; Metazoa - 5; Fungi - 358; Plants - 145; Viruses - 0; Other Eukaryotes - 140 (source: NCBI BLink).
Link
InterPro Scan - TAIR