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GT17142

CSHL Arabidopsis genetrap mutant lines

Original: GT17142

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT17142

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19511451 [Map]; Strand: c
      • AT2G47550.1 - [+] show detail - Plant invertase/pectin methylesterase inhibitor superfamily
        Distance: 0; Region: exon3 (CDS)
    Flanking Genome Sequence: GT17142 - 5-prime edge 
    TTGGAAACAT CAGTTGCGTT GATGACGAGA TAACCAGGCC AAGTGCACTC 
    GGTTTGTCGA GTCAGAACCA GGTCCGGTAT TATTATATTC CGCGTAGTAA 
    AGTGTGCTCA ATGCAAAATC ACCAGACCAT GCATTCCAAC CACTCGGTTC 
    TAGAAACCCG TCTATGTAAG TTTGCATGAC AACGGTTCTA GAATATTCCT 
    TCCATGGTCG ACCAAGATAA GTCTTCACTG TATAGTTGCT CGTAGCCAAA 
    TCATCTGCCG GTCTTATAGT ACAACCATGA ATTGCCGTCC CAGTGTTTTG 
    GTTCATCTCA C

AT2G47550.1

Model type
Protein coding
Short Description
Plant invertase/pectin methylesterase inhibitor superfamily
Computational Description
Plant invertase/pectin methylesterase inhibitor superfamily; FUNCTIONS IN: enzyme inhibitor activity, pectinesterase activity; INVOLVED IN: cell wall modification; LOCATED IN: endomembrane system, cell wall, plant-type cell wall; EXPRESSED IN: 20 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase, active site (InterPro:IPR018040), Pectin lyase fold/virulence factor (InterPro:IPR011050), Pectinesterase, catalytic (InterPro:IPR000070), Pectinesterase inhibitor (InterPro:IPR006501), Pectin lyase fold (InterPro:IPR012334); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily (TAIR:AT4G02330.1); Has 2676 Blast hits to 2617 proteins in 319 species: Archae - 6; Bacteria - 600; Metazoa - 1; Fungi - 202; Plants - 1841; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink).
Link
InterPro Scan - TAIR