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GT16973

CSHL Arabidopsis genetrap mutant lines

Original: GT16973

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage
Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT16973

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25072872 [Map]; Strand: w
      • AT5G62440.1 - [+] show detail - Protein of unknown function (DUF3223)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT16973 - 5-prime edge
    ACCAGAAAGA GCATCTGCTT TTCCACATTG GGTGGGTTCT TACTTGGAAG 
    GTTTTGATTC CTCCTCCAAT CTTCATCTCA CTCGA
  • 5 prime edge [+] show sequence

    1. Chromosome: 5; Position: 25072825 [Map]; Strand: w
      • AT5G62440.1 - [+] show detail - Protein of unknown function (DUF3223)
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT16973 - 5-prime edge
    CTTTATCCCT GTCCGGAGCT GAATCGTCTG CAGTATCGTC TTCCCTAACC 
    AGAAAGAGCA TCTGCTTTTC CACATTGGGT GGGTTCTTAC TTGGAAGGTT
    TTGATTCCTC CTCCAATCTT ATTCTCACTC GACGAANGGN CCTTCTTAAT
    CAGATCTAGC AGCACCATGT GCTCATACTG AAATGTACAA TCCAGAACAA
    AGTTCAGTAC AACGAGTTAG TTAGTTGGAA GCTCAAAAGA AACTGCAACA
    ACTGTAATAT ATTACATGAC TATGCAATGT TTTATCTTTT ATTTGTGCCC
    TCAAAATTTG ACATTAACTT CATTCTTCTA ACCATTATAT GACATCAAGA
    CCCAAAAAAA CTTTCTAATT CACACACAAT CCACAATCAT ATAATCAGTA
    AGAACACGAT ACATTTGAAC TTTTCAACTA GTAAAAAAGC TGCAAAGGAG
    TCCAATTTAC AAGCTATCTC CACTTCACTA ATCCTCTCCC TAAACATAAT
    ACAATATCCA CAATCATTGT AAACAACCAC TAATTTGAGA CAAAAACAAA
    ATTCTAACAC CAAACACTGA ATCCAAAATC AAATCATATG ACGAATACAA
    AGGCGAACCC AATTCTCAAT TTCTTTA

AT5G62440.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF3223)
Curator Summary
Encodes a protein DOMINO1 that belongs to a plant-specific gene family sharing a common motif present in the tomato DEFECTIVE CHLOROPLASTS AND LEAVES (LeDCL) protein. DOMINO1 is located in the nucleus. Arabidopsis embryos carrying the domino1 mutation grow slowly in comparison with wild type embryos and reach only the globular stage at desiccation. The primary defect of the mutation at the cellular level is the large size of the nucleolus that can be observed soon after fertilization in the nuclei of both the embryo and the endosperm. DOMINO1 might have a role in ribosome biogenesis and in determining the rate of cell division.
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: nucleologenesis, regulation of cell division, embryo development; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF3223 (InterPro:IPR021602); Has 1122 Blast hits to 800 proteins in 144 species: Archae - 2; Bacteria - 150; Metazoa - 333; Fungi - 187; Plants - 279; Viruses - 3; Other Eukaryotes - 168 (source: NCBI BLink).
Link
InterPro Scan - TAIR