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GT16880

CSHL Arabidopsis genetrap mutant lines

Original: GT16880

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT16880

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 10285117 [Map]; Strand: c
      • AT3G27750.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unk...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16880 - 5-prime edge 
    CCTACTTTCT CCCTGTAGAA CAAGGTCAAG AGGAGGATAC TCTGTACGGA 
    GAGTGGAGAG TACATGGACA GCGAGTGTGC AATAGTCTTG ACGGAGAAGC 
    TCACGGAGGA CGGAGATGAG ATCGGATTTT ATGAGACGGC GGAGAGGACG 
    GAGGGTAAGG GAGAGGGAGA CACCGGTTCG ATGAGCTCGT TTGAGAGATT 
    GGATTGATTG GATTGCTTCG GTGCTTAGGA TTCGGCCTTT GAGAAGTGGT 
    CCGCGGTTGT CTCGTGGACC GCATCGGATC GAAACGAACG TTCTCTTAGG 
    AACGATGACG CTAAGGGTAT GGCTATGGCT AAGGCTTGGT GGTCGAGTCT 
    GGCTGAGAGA AAGCGCCATT ATTAATCACA CCAATCTTTA CGAGTGTGGT 
    TGTGTGAGTG AGAGAGATGG TCTTTCATTG GGCAAGCCCA TATTAATTTA 
    TAAAAGGCCC ATATGTGACA CAAAATTAAT TAATTTATAC TTTCTAATTA 
    TGCGTCGTTT ATATTTCTGT TCCCGCTAAT TTCTCTACAC GAGTCTATCA 
    TTACACTTGC AAGAGCGACT CTATCTTCTT CTTTTTTTTC AAATTCTTGT 
    TTC

AT3G27750.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: Vacuolar sorting protein 9 (VPS9) domain (TAIR:AT5G09320.1); Has 106 Blast hits to 106 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 4; Plants - 102; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR