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GT16875

CSHL Arabidopsis genetrap mutant lines

Original: GT16875

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16875

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 907880 [Map]; Strand: c
      • AT4G02070.2 - [+] show detail - MUTS homolog 6
        Distance: 0; Region: intron5 (CDS)
      • AT4G02070.1 - [+] show detail - MUTS homolog 6
        Distance: 0; Region: intron5 (CDS)
    Flanking Genome Sequence: GT16875 - 3-prime edge 
    ATGAAACGGT AGAGGTTTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    TTGTTATGAC TCATAACTAG TTGACGCATT TGAATACATC TGTTAAAAAT 
    GTTCAAAAAC CCAAAGATTT GGCATCAGAT TATGCTAAGA GGGTTCATTT 
    CATTCGAGTA ACATTACAAA TTTCTCCTGT ATTGGCTCTA ATGTATCTCT 
    CTTTACGAGC CCATGACGTA TGCATTTATT TTGTAGGGAG AGCAACCTCA 
    TTGTGGATTT CCGGAGAAGA ATTTCTCTGT AAACATTGAG AAATTAGTTA 
    GTAAGGTTTG TTTCCAGAAA TATAGTAACT CCAATTCAAG CGAGATCTAT 
    TTCTTGTTAC CTGGAGAGAA ATTACATTCA TGGCCAATGC TGTACTTTGG 
    GAAGAAATAA AGATGATTGA ATTCAATGGA ACAGGGCTAT CACGTTTTAG 
    TTGTCTAACA AACAGAAACA CCTGATCAGC TGGAGCAACG CCTAAAAGAG 
    ACAGGTTCCA AGGATAAAGT ATGTCCCACT ATGAATCTAA TTCAGTTGGC 
    ATTCTCAGTT CAAGTCAATT AATTTGTTTG CTCTTGAAAC TAAAATTTGC 
    TCACCTTGGC TGATGCCTAT GTAGAAAAAT TATGATAGGA GGGCTCATAG 
    TGACAGAACT CCTGTTTTTA TAGGATGTGA AGCGCGAAGT ATGTGCAGTT 
    GTTACAAAAG GCACGCTGAC ACATGGGGAG ATGCTATTAA CTAGTCCGGA 
    TGCATCTTAT CTAATGGCCT TGACTGACGG AGGAGAAAGT TTAACTGATC

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 907829 [Map]; Strand: c
      • AT4G02070.2 - [+] show detail - MUTS homolog 6
        Distance: 0; Region: exon5 (CDS)
      • AT4G02070.1 - [+] show detail - MUTS homolog 6
        Distance: 0; Region: exon5 (CDS)
    Flanking Genome Sequence: GT16875 - 5-prime edge 
    CCTACTTTCT CCCTGCATAA CAAACAGTTA CCTTCATGTA CTGTATATCT 
    AGTTCCTTGG CTCCTACATG TGCATCCATC TCAAAAAGCT CATAGAATTT 
    ACCCATCTGC TTGCCACAAA AGAAGAACAT TTATCCTGGA ATCTCCCATC 
    AATAAATAAG TTATAACTAA ATAAGTAGTT ATCATTCTAC CTTGAAGAAT 
    ACAACTTTGT CCATATGCTT TGATTTAAAC TCCCACCATT GTCTCTGGAA 
    AAAGGCCACA AAATCATATA AGTGAAAGTT GATTAGCTCA CCAAAAAATC 
    CTTAACCAAA TTTCCATGTG CTCTTGTTAC CTGGCCTCCT GTTAATTTTT 
    TCACAAAATC AGGAGGGAGG TAGAGTGTCC TCGGATCATA ATTCTCATCA 
    GTAGGGCGTC TCCTTTTAGC ATCCCTTCGG TCTCTGTTCA CCAAAGATAA 
    TTAACAGAAC AAACTTAGCT CAAATAGGGA TCATGCAGCC TACTAATACA 
    TCATGAAGTT AAAAGAAAAT CAGAGATGTT CCTGCCAGTA GAGAAGTCAA 
    TATTTATTAA GACATAAATT TACATTCTCT TCTCCTAACC ACCGTAGCAA 
    ATAGCCTCTA AGATGGAATT TTTTTTGTGA AAGACTTACA CTCCCAAAAA 
    GCGGAATTTC TCAGATTCAC GAGCACCAAA TCTGGCAAGA GCATCCCCAT 
    CCAATACGTT ATCTTCCAAA CCCTTGACCA CCCTATCAGC TGTAGTAAGA 
    CACAAATAAT ATTTAGC

AT4G02070.1

Model type
Protein coding
Short Description
MUTS homolog 6
Curator Summary
encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.
Computational Description
MUTS homolog 6 (MSH6); FUNCTIONS IN: damaged DNA binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Msh6 (InterPro:IPR017261), DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-homologue MSH6 (InterPro:IPR015536), Tudor domain (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1); Has 29702 Blast hits to 21889 proteins in 2967 species: Archae - 234; Bacteria - 11721; Metazoa - 3243; Fungi - 2118; Plants - 3658; Viruses - 802; Other Eukaryotes - 7926 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G02070.2

Model type
Protein coding
Short Description
MUTS homolog 6
Curator Summary
encodes a DNA mismatch repair homolog of human MutS gene, MSH6. There are four MutS genes in Arabidopsis, MSH2, MSH3, MSH6, and MSH7, which all act as heterodimers and bind to 51-mer duplexes. MSH2*MSH6 bound the (+T) substrate strongly, (T/G) well, and (+AAG) no better than it did a (T/A) homoduplex.
Computational Description
MUTS homolog 6 (MSH6); FUNCTIONS IN: damaged DNA binding; INVOLVED IN: mismatch repair; LOCATED IN: chloroplast; EXPRESSED IN: 16 plant structures; EXPRESSED DURING: 8 growth stages; CONTAINS InterPro DOMAIN/s: DNA mismatch repair protein Msh6 (InterPro:IPR017261), DNA mismatch repair protein MutS, clamp (InterPro:IPR007861), DNA mismatch repair protein MutS, connector (InterPro:IPR007860), DNA mismatch repair protein MutS, core (InterPro:IPR007696), DNA mismatch repair protein MutS-like, N-terminal (InterPro:IPR007695), DNA mismatch repair protein MutS, N-terminal (InterPro:IPR016151), DNA mismatch repair protein MutS, C-terminal (InterPro:IPR000432), DNA mismatch repair protein MutS-homologue MSH6 (InterPro:IPR015536), Tudor domain (InterPro:IPR002999); BEST Arabidopsis thaliana protein match is: homolog of DNA mismatch repair protein MSH3 (TAIR:AT4G25540.1).
Link
InterPro Scan - TAIR