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GT16847

CSHL Arabidopsis genetrap mutant lines

Original: GT16847

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16847

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24383454 [Map]; Strand: c
      • AT1G65580.1 - [+] show detail - Endonuclease/exonuclease/phosphatase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G65585.1 - [+] show detail - pseudogene, similar to oj991113_30.20, blastp match of 25% identity and 8.9e-...
        Distance: -889; Region: promoter
    Flanking Genome Sequence: GT16847 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC AGTTTCATCC CTACCTCTAA 
    TCCCCTCCCA CTTCCATACA ATTCACTAAA CTCCCAAACT CTCAACGCAC 
    CATCCTCACC ACCAGTCCAT AACTGTCTCT CAGTACTAGT CATTGTCCTC 
    AAAAACCTCC CAATTTGAGT TTCTCTCAAT GGATGAGGTC TCACATCAAG 
    ACTAGGTGGT CGATTCGGAT GAACCGCTGA CCTAATCGGA ACTTTGAAGA 
    TCCCAGATTC ACCACACTTA CCAACAAATT CCGGTAACGA ATCGGAGCCG 
    TTTCCATCAC CGATCCCGTC GTGATTACCG TCTTCGCTTA GTCTCCGGTC 
    GAGAAATTGG ATCATGTAAT CGATACGTTT GTTGCTGTCG TCGACGGAAG 
    GCTGAGATTC ATCGTCGCCG GAGGAAGATG AAGAGGAGTA AGCTGAACGG 
    TTGAAAAGCG TGGACGGAGT TGCGGCGGAG AAGGAAGGAG AGAAGAAGGA 
    GAAAACGTCA TCGTTTTGAT CGTTTTGACG ATCTTCCATG AGTATTGGAC 
    TTGAAGCTTT TACTTGGAGC AGAGAGAGAC GACGAGTTTT TCGGTACAAA 
    GCCTCTCGAG ATATTTCTCT CTCAAGCTAA ATCGCAGAAA TGCTTGAAAC 
    GTGTTGTTTC GGATCTCTCG TTTTCTTTGT TTTTTTCAGA CATTCGAAAT 
    TATTTATTTT AAATATAACA ACAAAATTTG TACTTGTAAA TTGGTAAAAA 
    CAAACCTTTA TAAC

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24383396 [Map]; Strand: c
      • AT1G65580.1 - [+] show detail - Endonuclease/exonuclease/phosphatase family protein
        Distance: 0; Region: exon1 (CDS)
      • AT1G65585.1 - [+] show detail - pseudogene, similar to oj991113_30.20, blastp match of 25% identity and 8.9e-...
        Distance: -947; Region: promoter
    Flanking Genome Sequence: GT16847 - 5-prime edge 
    CCTACTTTCT CCCTGATTAG AGGTAGAGGA TACGGCGCCG TATAAGGAGA 
    GTTTAGGGAA TGAGTTTGGG TCTGCTGCTG TTGTTTGTAT GATTGGTGAT 
    GAAGGTAGTA GAGTTGTTTG GAGTGGACAT AGAGATGGGA GGATTAGGTG 
    TTGGAGATTG AGAGGTGATC ATGGTATTGA AGAAGCTTTG TCATGGCAAG 
    CTCATCGTGG TCCGGTTCTC TCCATTGCCA TCTCGGCTTA TGGTGAGTGT 
    TGTTCTATTG TAAGTTTCTG TTTTCCTTGT TTACATAGTT TGGGAATAGA 
    TTTGTTGTTA GATTAAGTAG CTTTTTAAGA TGAAAGAAGA AGGATTTTGA 
    ATGGTTACAT CGAGTTTCTT ATTGTGGAAA TTTGGTTGAG GAACAAAATT 
    AGTGATCTTG ATGATATTTG GTCGGCCTGA ATCAGATTGT TATACTGGCT 
    AACACGTATA TTGGCTCCTC TAGTTCCACC GGACAAGCTG GTTTAGTCAT 
    GTAGTAGCTG GTACATTATA

AT1G65580.1

Model type
Protein coding
Short Description
Endonuclease/exonuclease/phosphatase family protein
Computational Description
FRAGILE FIBER3 (FRA3); FUNCTIONS IN: inositol or phosphatidylinositol phosphatase activity; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Inositol polyphosphate related phosphatase (InterPro:IPR000300), WD40 repeat-like-containing domain (InterPro:IPR011046), WD40/YVTN repeat-like-containing domain (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680), Endonuclease/exonuclease/phosphatase (InterPro:IPR005135); BEST Arabidopsis thaliana protein match is: Endonuclease/exonuclease/phosphatase family protein (TAIR:AT2G43900.1); Has 2602 Blast hits to 2499 proteins in 289 species: Archae - 0; Bacteria - 180; Metazoa - 887; Fungi - 607; Plants - 609; Viruses - 0; Other Eukaryotes - 319 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT1G65585.1

Model type
Pseudogene
Computational Description
pseudogene, similar to oj991113_30.20, blastp match of 25% identity and 8.9e-08 P-value to GP|21741715|emb|CAD41338.1||AL662946 oj991113_30.20 {Oryza sativa (japonica cultivar-group)}
Link
InterPro Scan - TAIR