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GT16737

CSHL Arabidopsis genetrap mutant lines

Original: GT16737

Phenotypes

Morphological phenotypes

Original description

  • embryo lethal (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT16737

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1073850 [Map]; Strand: w
      • AT1G04130.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT16737 - 3-prime edge 
    AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTAGTT 
    ATGAGGAGAT AACCTCATTG ATTCCTCAGC ATCGGTGAGG GCACGCCGAT 
    AGTTGCCTAA GAGTAGATTA ACATGGGATC GATTCGAGAA CAAAATAGAG 
    GTCTCTGAAT CACTTAGAAC TCCCTGACTA ATGGCTTTCG TGTAACAATC 
    AATCGCCTCA GAGTAATGCT TTTTCCCTTT CCTTACACAT TCATCGTCAC 
    TCGACCAGAG TTTAAACAGC AAAGGAATGA AATCGATACT ACATCAAACA 
    TCAAAATCGA ACGAGCCAGA GAAGAGAGAG GTACTTTGAA TTCGATGGCG 
    GTGGATTCTT TGAGAGCAGA AATAGCTTCA AGATCAGCCT TTTCCTTCTC 
    CGTGGTCGGC GTCGCTCCAG CGTCCATCCA TAGCGCCATT GATTCGCAGC 
    AGAAAGATAG AAAGCAAATA GTGAAATATT CGATTAACCT AGACGACGAC 
    AGAAGCAGGA GAAGAAGAAG AAGAAGCTTC GAGTTCTTTG GAGGGAGAGG 
    GACAGATACC GGTTATTTCC TCTCGTTAAC CGAATACCCG ACCGGATCGA 
    ATCGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 1073904 [Map]; Strand: w
      • AT1G04130.1 - [+] show detail - Tetratricopeptide repeat (TPR)-like superfamily protein
        Distance: 0; Region: intron2 (CDS)
    Flanking Genome Sequence: GT16737 - 5-prime edge 
    CCTACTTTCT CCCTGCTCAT AACGTTAAGG TAGTAAGCTA AACTTTCTCT 
    TTGATTTCGT TGTACCGTTT TGGTTGGTTT CTCTGATGGG TTTCAATGCT 
    TCAAAAGGCG GTGTATCGAG CTGCTAAGGC ATCCATGTCA TTGGATTTGC 
    TGAACGAGGC AAAGTCTTAT TGTGAAAAGG GAATCGAGAA TGATCCGAGT 
    AATGAGGACA TGAAGAAGCT TTTAAAACTT GTGAATTCAA AGAAGCAAGA 
    GAAAGAACAT CATGAGGCTC AAGCCTCACA GGCGGTGGTG GAAGCCAAGG 
    TTTGATTTAC ATGAATATCA AGCTTTAATA CATTACAAGT CATTTCACTT 
    TGAGCATTTT AGCTGACTCA GTTTTCCTTG GTTTCACTAC AGGCTTGTCT 
    CTCTGCGATC GAGAACAGAG GAGTGAAGAT TGGCAAAGCA ATGTACCGAG 
    AACTCACTGG TTTGAAGAAG CCAATGTTAG ATAAAAACAA CATCCTTCAT 
    TGGCCTGTCC TGCTTC

AT1G04130.1

Model type
Protein coding
Short Description
Tetratricopeptide repeat (TPR)-like superfamily protein
Computational Description
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT1G56440.1); Has 5277 Blast hits to 4657 proteins in 398 species: Archae - 14; Bacteria - 308; Metazoa - 2191; Fungi - 837; Plants - 950; Viruses - 0; Other Eukaryotes - 977 (source: NCBI BLink).
Link
InterPro Scan - TAIR