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GT16584

CSHL Arabidopsis genetrap mutant lines

Original: GT16584

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16584

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 3; Position: 3534826 [Map]; Strand: w
      • AT3G11280.1 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: 0; Region: exon1 (5UTR)
      • AT3G11280.2 - [+] show detail - Duplicated homeodomain-like superfamily protein
        Distance: -20; Region: promoter
      • AT3G11285.1 - [+] show detail - pre-tRNA
        Distance: -320; Region: promoter
    Flanking Genome Sequence: GT16584 - 3-prime edge 
    ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
    TCACTATCTC TCTCTCTTTA CTGGGTCTTC TTCAGCTTCT GAGTCTTCTC 
    CTCTCTCTCT ATCTCTCAAG TGGGCTTTGC TTTGCTGTTT TTGTCTTCCT 
    TCGACGACTC ACTTTTGCAG ATTCTCATAA ATTCTTCAAA GCTTTGAGTC 
    TTTTTTCAGA TTCGAAGGTC GGTTTTATAT ATGCTTCATC TCTCTCGACC 
    AAATCAGGTT CTTGATTCCC TCAGTATACG ATTCTTCATT TTTCCTTCCC 
    TTTTGTTTTT CTTCTTCTTT GATTCCTACT ATATTATCAT TAAACCTTAT 
    ATATAAAAGC TTCCATTATT TCCTTATATC ACAAATCTAT CTTTTAAGCT 
    TCCTCCACAC ATAGAGCAAG AAAATGGACT TTTTTGAGCT GTGTTTGTAG 
    TTGAAACTTA TTCTTCCCTT TTTTTGTTTT TAGGTATGGA GACTCTGCAT 
    CCATTCTCTC ACCTACCTAT CTCTGACCAC CGGTTCGTTG TTCAAGAGAT 
    GGTGAGCTTA CACAGCTCGA GTAGCGGTAG CTGGACTAAA GAAGAGAACA 
    AGATGTTCGA ACGAGCTCTT GCGATATACG CTGAAGACTC GCCTGATCGC 
    TGGTTTAAAG TTGCTTCCAT GATCCCTGGA AAGACTGTTT TTGATGTTAT 
    GAAGCAATAT AGTAAGCTTG AAGAAGACGT TTTCGATATT GAAGCAGGAC 
    GTGTTCCCAT TCCTGGTTAT CCTGCAGCT

AT3G11280.1

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Curator Summary
Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11280.2

Model type
Protein coding
Short Description
Duplicated homeodomain-like superfamily protein
Curator Summary
Putative transcription factors interacting with the gene product of VHA-B1 (vacuolar ATPase subunit B1; as shown through yeast two-hybrid assay).
Computational Description
Duplicated homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: Molecular chaperone, heat shock protein, Hsp40, DnaJ (InterPro:IPR015609), SANT, eukarya (InterPro:IPR017884), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), SANT, DNA-binding (InterPro:IPR001005), Myb, DNA-binding (InterPro:IPR014778), Homeodomain-like (InterPro:IPR009057), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930); BEST Arabidopsis thaliana protein match is: Duplicated homeodomain-like superfamily protein (TAIR:AT5G05790.1); Has 1712 Blast hits to 1708 proteins in 167 species: Archae - 0; Bacteria - 0; Metazoa - 132; Fungi - 4; Plants - 1403; Viruses - 0; Other Eukaryotes - 173 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G11285.1

Model type
Pre-tRNA
Short Description
pre-tRNA
Computational Description
tRNA-Arg (anticodon: CCT)
Link
InterPro Scan - TAIR