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GT16564

CSHL Arabidopsis genetrap mutant lines

Original: GT16564

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16564

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11783301 [Map]; Strand: w
      • AT4G22285.1 - [+] show detail - Ubiquitin C-terminal hydrolases superfamily protein
        Distance: -621; Region: promoter
      • AT4G22290.1 - [+] show detail - Ubiquitin-specific protease family C19-related protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT16564 - 3-prime edge 
    GTAGAGGTAT TTTACCGACC GTTACCGACC GTTTTCATCC CTAAGAAGCA 
    GTCTCCAGTG GGTGCCGGTG GTGGCACTGC CTCTTCCCAA CCTACGCAGA 
    TGGCTTAATC ATAACCTGCG ACGATAATCA AAACGCTGAT GTCATTCCTG 
    TCTGAAACCA ATATGTATGT AATGCTTCTT TTGCCCGATA TTCAAATATA 
    AAAATGCTTA AAGAGCACTT CCTCCTCGAC TAAANGAAGG AAGAGAAGAG 
    AGGACAGCCA AATTGGTTCA AAAAGAAAAC CAAATAGGCT TTGCCTTTTG 
    CCTTATTAGT TTTTATTTTT CTTTCTTAAT TCTGTTTTTT TTTTGCCCCT 
    TGAATGGGGT TTATGTTTGG GTACATAGAG CCCCAAAGGG AAAAGGCTAT 
    TTTCGGTTAA AAAAATTATT ATGTCATATC CCCTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 11783353 [Map]; Strand: w
      • AT4G22285.1 - [+] show detail - Ubiquitin C-terminal hydrolases superfamily protein
        Distance: -673; Region: promoter
      • AT4G22290.1 - [+] show detail - Ubiquitin-specific protease family C19-related protein
        Distance: 0; Region: exon4 (CDS)
    Flanking Genome Sequence: GT16564 - 5-prime edge 
    TTCCATCCTA CTTTCTCCCT GCTGCTTCTG CCGGAGTAAC TATCATCAGA 
    ACGTTGTCGT GCCTTCTTAC CATCCCCATC ACGCTCACTG TGCTTCCTTC 
    ATCTCTGTCT ACGATGCATC ACACACAATC AAATATGATT TTAAATCAGT 
    AACAAAGGGA TTCTCTTTGA CAGCAAAAGT GAAACCAATG AGCTTTCTTG 
    TGTACTAAAA ACGATCATTT GTACTAGAAA CGGTGACTTT TGGGTCTCAT 
    TAGCTTTAGA CTTAATTCAA ACTTCTAAGC CCTTTAACTT CAGACTTATC 
    ATGCACTGAT GTGAGATGTT TAAGCCGTTA ACGTTGACAA TAGTTGCTGG 
    ATTTCTTCCT ACAATACATG TCTCATCACA TCTTTTTCCA TTACTGTGAC 
    TTTTAATGTG GAAGAATAAC CAACGGTACC AGTCAAAGTA AACGCCTACA 
    TCAACAGTTT AATACTTCCC ATTCTACTAA AGAAATCAGG GTTTAAAAGG 
    TTGTAATTTG GGTAAAATAA GGATCCAAGG TTTGGATAGT GACTCTAATA 
    ACGTTATTTT TAGATTTTGG CTAAGATACT TCGTGCAAAC CGAAGAACAG 
    TTTAAGATGC GTGTTGAATA TAACATACCC TTCTT

AT4G22285.1

Model type
Protein coding
Short Description
Ubiquitin C-terminal hydrolases superfamily protein
Computational Description
Ubiquitin C-terminal hydrolases superfamily protein; FUNCTIONS IN: ubiquitin thiolesterase activity, zinc ion binding; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: intracellular; CONTAINS InterPro DOMAIN/s: Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, UBP-type (InterPro:IPR001607), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: Ubiquitin C-terminal hydrolases superfamily protein (TAIR:AT4G22350.2); Has 3604 Blast hits to 3114 proteins in 212 species: Archae - 0; Bacteria - 0; Metazoa - 2060; Fungi - 575; Plants - 445; Viruses - 0; Other Eukaryotes - 524 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G22290.1

Model type
Protein coding
Short Description
Ubiquitin-specific protease family C19-related protein
Computational Description
Ubiquitin-specific protease family C19-related protein; BEST Arabidopsis thaliana protein match is: Ubiquitin-specific protease family C19-related protein (TAIR:AT1G78880.1); Has 147 Blast hits to 147 proteins in 22 species: Archae - 0; Bacteria - 2; Metazoa - 5; Fungi - 0; Plants - 137; Viruses - 0; Other Eukaryotes - 3 (source: NCBI BLink).
Link
InterPro Scan - TAIR