Home
Mutant Lines
GT16472

GT16472

CSHL Arabidopsis genetrap mutant lines

Original: GT16472

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16472

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

3 prime edge [+] show sequence

Chromosome: 4; Position: 153049 [Map]; Strand: c
- AT4G00350.1 - [+] show detail - MATE efflux family protein
  Distance: 0; Region: exon2 (CDS)

GAAACGGTAG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAT 
TCATGACGAT CATTGACTTA ACTGGACATC TTGAAGACCC TGTCATAGCC 
GTTGGATCTC TCTCAATCTG GTTAACCGTT AAAACCCTTC ACAAACTCAA 
AGATTTACAT TCTTTTTCTG ATAACTGATA ACACTTTTGT TTCTCTCAGT 
ATGAACATTA ATGGATGGGA AGGAATGTTG TTCATAGGAA TCAATGCAGC 
TATAAGGTAA AAAGCGAAAG CAATCTTTGT GTCTTCTAAA AGAAGGCGTT 
AATTAGACTT ATATATATAT GCGAGATGTT TCTTTCAGTG TTAGGGTGTC 
GAATGAGCTA GGATCGGGAC ATCCACGAGC TGCGAAATAC TCGGTGATCG 
TAACGGTGAT AGAGTCTCTC GTCATTGGAG TAGTGTGTGC AATTGTAATT 
CTCATAACAA GAGATGACTT TGCTGTGGTT TTTACGGAGA GTGAAGAGAT 
GAGAAAGGCG GTAGCTGATC TTGCGTACCT GCTCGGTATA ACGATGATTC 
TCAACAGTTT ACAACCAGTT ATATCAGGAG TTGCAGTAGG AGGAGGATGG 
CAAGCACCGG TGGCTTATAT AAACTTGTTT TGTTACTACG CTTTTGGATT 
ACCTCTAGGG TTTTTGTTAG GTTATAAAAC AAGCC

5 prime edge [+] show sequence
1. Chromosome: 2; Position: 14675287 [Map]; Strand: w
  - AT2G34790.1 - [+] show detail - FAD-binding Berberine family protein
    Distance: 0; Region: intron1 (CDS)
Flanking Genome Sequence: GT16472 - 5-prime edge
```
CCTGCTGTTA CCGAGACCAA CAACCGATTA ATTATCGGAT CATTAACGAA 
AGCTCAACCA TGTGATCGGT TTGATTTTAT TTTGGTTTGT TGGTTAAACC 
GGTTCATCTC ACTCG
```

AT2G34790.1

Model type: Protein coding
Short Description: FAD-binding Berberine family protein
Computational Description: MATERNAL EFFECT EMBRYO ARREST 23 (MEE23); FUNCTIONS IN: electron carrier activity, oxidoreductase activity, FAD binding, catalytic activity; INVOLVED IN: polar nucleus fusion, embryo development ending in seed dormancy; LOCATED IN: cell wall; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: 4 anthesis, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: FAD-binding, type 2 (InterPro:IPR016166), Berberine/berberine-like (InterPro:IPR012951), FAD linked oxidase, N-terminal (InterPro:IPR006094); BEST Arabidopsis thaliana protein match is: FAD-binding Berberine family protein (TAIR:AT1G30760.1); Has 4988 Blast hits to 4831 proteins in 776 species: Archae - 82; Bacteria - 2407; Metazoa - 5; Fungi - 1644; Plants - 646; Viruses - 0; Other Eukaryotes - 204 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G00350.1

Model type: Protein coding
Short Description: MATE efflux family protein
Computational Description: MATE efflux family protein; FUNCTIONS IN: antiporter activity, drug transmembrane transporter activity, transporter activity; INVOLVED IN: drug transmembrane transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 9 plant structures; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis, C globular stage, petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Multi antimicrobial extrusion protein MatE (InterPro:IPR002528); BEST Arabidopsis thaliana protein match is: detoxifying efflux carrier 35 (TAIR:AT4G25640.1); Has 10139 Blast hits to 10053 proteins in 1934 species: Archae - 181; Bacteria - 7281; Metazoa - 140; Fungi - 324; Plants - 1355; Viruses - 0; Other Eukaryotes - 858 (source: NCBI BLink).
Link: InterPro Scan - TAIR