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GT16454

CSHL Arabidopsis genetrap mutant lines

Original: GT16454

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16454

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 7337583 [Map]; Strand: c
      • AT4G12390.1 - [+] show detail - pectin methylesterase inhibitor 1
        Distance: 227; Region: intergenic
      • AT4G12400.2 - [+] show detail - stress-inducible protein, putative
        Distance: 1076; Region: intergenic
    Flanking Genome Sequence: GT16454 - 5-prime edge 
    AAGATTATTC AAATAGTAAA GTGACTAGCT CTTGGTCTAA TGGTTTCCGT 
    GAAAAGGAAC AAAAACACTA AAGGGTATGC AGAAAGTAGG AGATTTGTCC 
    AACTTAGAGG TTATAATTTG TATGCTTAGA AAAAGTGTAT ATGTGTGAAG 
    TAAGAAACTC ATCTGATTTT AGAAAACAAC ATTGGTTATT AGAGTGGTTA 
    AAAATGGTAA ACATTATTGT GGCCATCCAT TGCTTATATC CGAGACCGTA 
    ACTATATTGA AATGTAGGAG CTCATCCAAT TTTTGTGGCC AATTCTTTTT 
    CTCCATAAAC CCGTTAAAAT CATCGTTATC TCTAGTCGAA ACCATGACAA 
    AAGCATAAAC ATCCCAAGCC TACACATAAA TACAAAGTAT CATAAAGAAA 
    CAAATCACCC ACTAGGACAA AAAAGAAAAT ACATGACAAA ACCTTATTAA 
    GGACCGAATT TTAATTTATT AGCCGAATAT TCTATGACTT ATGCCTAGCC 
    GCGAACCGGT TTACAAGAGC CAATGCATTA CTAGTAACTC GAGCCACATG 
    AACCACTCTT CTTCTAATCG CTGATTTGAC CACACCGTCC ATGACCTTTC 
    CATCGAACCC ATCCAGACAC GTTGTCTCAT CCGTTAAGGC AGCACTAACC 
    CAAGTCTCAA CGTTACTTAG TCTCCACAAG AACTCGTCTC GATCACGACC 
    AGATCGACCA ACTTGC

AT4G12390.1

Model type
Protein coding
Short Description
pectin methylesterase inhibitor 1
Computational Description
pectin methylesterase inhibitor 1 (PME1); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G62770.1); Has 665 Blast hits to 661 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 665; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G12400.2

Model type
Protein coding
Short Description
stress-inducible protein, putative
Computational Description
stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link
InterPro Scan - TAIR