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GT16352

CSHL Arabidopsis genetrap mutant lines

Original: GT16352

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16352

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 5; Position: 21362905 [Map]; Strand: w
      • AT5G52660.1 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -745; Region: promoter
      • AT5G52660.2 - [+] show detail - Homeodomain-like superfamily protein
        Distance: -745; Region: promoter
      • AT5G52670.1 - [+] show detail - Copper transport protein family
        Distance: -750; Region: promoter
    Flanking Genome Sequence: GT16352 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTATT 
    AATTCAGTTA CGTAACAGAC TCCAACGCCA AAACATTAGT ATAAACAATA 
    TTAAGAACGT GGCATTACCA ACAATCCAAC AAAGATGTTG TCACATCGAA 
    ACCAATTAGA AACCTAAAAG ATATAGTGAA GGTTGATCTC TTTCTTTAAC 
    ATGCCACATT TTTGCATTTC TTCCTTTATT TGCGAGGTTA AAATATGTTC 
    ATTTGTTAAA GAAATTTATA AACCAATGTA AACCATCCAT TTAAATTCTC 
    ATTCACAAAT CAATCGTTCT AATCGAAGAA TGCCAAGAAA AAAAGCATTG 
    TTGTCTTGTT GATTGGGCTA AACATTAAGA CAAAAACAGT GGCATCACCA 
    AGTTTTTTTC TGACATATCG ATGTTTCATA ATGGGCTAAA TAATAACCCA 
    TTTTCCCATT AGTTTCTTTT TTTTTGAACG GGCAAGTTGC CCATTAGCTA 
    AAAAGGCTCC ACAAAACATA AAATTTGGAC AATTAGAAAA CCTTTACCTA 
    AACTACAAAA CAATCCTAAA TTCAACCAAA AAGAAAAGAC CCTTTTTTTG 
    GTATAAGCGG ATACAAAACA TAAATGGAAA AATCTTTATT ACAAAGATCC 
    AAATACGTGG CACGTTATAT TAGGTCACAA GAACTATTTT GCCGACCTCA 
    AAAACGATCA CAAGAATAAG TTTCTTTCAT C

AT5G52660.1

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1); Has 1357 Blast hits to 1347 proteins in 119 species: Archae - 0; Bacteria - 4; Metazoa - 93; Fungi - 5; Plants - 1057; Viruses - 0; Other Eukaryotes - 198 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G52660.2

Model type
Protein coding
Short Description
Homeodomain-like superfamily protein
Computational Description
Homeodomain-like superfamily protein; CONTAINS InterPro DOMAIN/s: SANT, DNA-binding (InterPro:IPR001005), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447); BEST Arabidopsis thaliana protein match is: Homeodomain-like superfamily protein (TAIR:AT4G01280.1); Has 1360 Blast hits to 1350 proteins in 120 species: Archae - 0; Bacteria - 4; Metazoa - 93; Fungi - 8; Plants - 1059; Viruses - 0; Other Eukaryotes - 196 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT5G52670.1

Model type
Protein coding
Short Description
Copper transport protein family
Computational Description
Copper transport protein family; BEST Arabidopsis thaliana protein match is: Copper transport protein family (TAIR:AT5G52720.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Link
InterPro Scan - TAIR