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GT16345

CSHL Arabidopsis genetrap mutant lines

Original: GT16345

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16345

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 10530566 [Map]; Strand: w
      • AT2G24735.1 - [+] show detail
        Distance: 0; Region: intron3 (NonCoding)
      • AT2G24740.1 - [+] show detail - SET domain group 21
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT16345 - 3-prime edge 
    TAGAGGTATT TTACCGACCG TTACCGACCG TTTTCATCCC TATTCTGGAA 
    TTTGTTTCTT GTGTCACTGC GATATGCTGA AGACTAGATC ATATATTCGG 
    TATTCAAGTC TTAATATTTT CTTGTTCTAA ACTATTAATT TTTCCCACAA 
    CCTTGTCAAT ACCACACAAT AATATGTCTC TGTAAAATAA TAGTGTGGAT 
    GTATTCTTAG TATCAGACGG TAATGGTTTA AAAAGAAGTA AGTTTTCTTC 
    CCAAAATCAA ATTGAACCTT GAAATTCTTG TATAGGCATA TACTCAATCT 
    GCATCATATG TAAAACTGAC GACATTTTGG TTTCTCGTAA ACCATTGATT 
    TACGAGTGCG GTGGATCTTG TCCAACCCGA ATGGTTGAAA CCGGTTTGAA 
    GCTCCACTTG GAAGTGTTTA AGACATCAAA CTGTGGTTGG GGTTTACGTT 
    CTTGGGATCC AATCCGAGCT GGAACTTTTA TCTGCGAGTT TGCCGGTGTG 
    AGCAAGACAA AAGAAGAAGT AGAAGAAGAT GACGAATACT TGTTCGACAC 
    ATCTCAGATT TATCATAGCT TCAGATGGAA CTATGAACTG GAGCTTTTGT 
    GTGAAGATGC TTGCGAACAA GTCTCTGAAG ATGCTAATCT TCCAACGCAA 
    GTCTTGATAA GCGCCAAGGA GAAAGGAAAT GTTGGTCGGT GAAGCACATT 
    CCTCCAATGA CAGAGTTAAC ATATGACTAT GGAGTTTCTT GTGTGG

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24095194 [Map]; Strand: c
      • AT1G64840.1 - [+] show detail - Protein of unknown function (DUF295)
        Distance: 0; Region: exon2 (3UTR)
    Flanking Genome Sequence: GT16345 - 5-prime edge 
    TTTCTCCCTG TTCCAGAACA ATGGGTAACA ATAGACATCA CAAAGTCCCT 
    ACAATCAAAT CAAAGTTGGT TTGCGATATA ATAAAAACAA AACTAACAGA 
    ATGTCTAAGG TGTCCCAAAG CGAGATTTTC GGATTAATTA GCGCTCAACT 
    TGGATAGCCA AAACAGGAGA TGTGTTGAGG ATCATCACAC GATTCTCCCT 
    TGTGGCTCTC CAACAATTGA GATCATCGTC CGCGCTTCTA GTATGTAGGC 
    CATATTTATA GGCAAAAGTT GGCTCATTGG TGAACAAAAT TGAGTTCCCA 
    CTAAGACCAC AACCATCAGG AAGTTCCTTA GCGGAGCAAG AGACATTTCC 
    AAAGTATCCA ATAAAGAACA CACGGTTTCC CAAATCGGTG ACCTCAACCC 
    ATTTACCACC CTTTTCATCT AGCCTACTCA CTATACATGT GAACCGGCTA 
    AAATCTATTA CATCAGAATT TGGGATGGTT ACCTCAACCA GAAAGAGTTC 
    ATCATTACCA GATGCAACCA GGTAGTTTAG TGGCTTGTGA GGCGAGGGTA 
    TCAAGAGAGT TACCTCCAGC GAATAAGGAT CAATAACGAA AGTATTTCTG 
    CTAAGAAAGG ATGCATAAAA TCATCCTCTA A

AT1G64840.1

Model type
Protein coding
Short Description
Protein of unknown function (DUF295)
Computational Description
CONTAINS InterPro DOMAIN/s: F-box domain, cyclin-like (InterPro:IPR001810), Protein of unknown function DUF295 (InterPro:IPR005174); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF295) (TAIR:AT2G24250.2); Has 216 Blast hits to 213 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 216; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G24735.1

Model type
Other RNA
Curator Summary
Unknown gene
Link
InterPro Scan - TAIR

AT2G24740.1

Model type
Protein coding
Short Description
SET domain group 21
Curator Summary
Encodes a SU(VAR)3-9 homolog, a SET domain protein (Homology Subgroup V; Orthology Group 1). Known SET domain proteins are involved in epigenetic control of gene expression. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. This protein is a putative histone methyltransferase (predicted to methylate H3K9/20) related to the the Drosophila Su(var)3-9 and mammalian G9a proteins.
Computational Description
SET domain group 21 (SDG21); FUNCTIONS IN: histone methyltransferase activity; INVOLVED IN: regulation of gene expression, epigenetic; LOCATED IN: nucleus; CONTAINS InterPro DOMAIN/s: SET domain (InterPro:IPR001214), AT hook, DNA-binding motif (InterPro:IPR017956), SRA-YDG (InterPro:IPR003105), Pre-SET zinc-binding sub-group (InterPro:IPR003606), Pre-SET domain (InterPro:IPR007728), Post-SET domain (InterPro:IPR003616); BEST Arabidopsis thaliana protein match is: SU(VAR)3-9 homolog 7 (TAIR:AT1G17770.1); Has 4288 Blast hits to 4094 proteins in 395 species: Archae - 0; Bacteria - 274; Metazoa - 2162; Fungi - 458; Plants - 1048; Viruses - 4; Other Eukaryotes - 342 (source: NCBI BLink).
Link
InterPro Scan - TAIR