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GT16159

CSHL Arabidopsis genetrap mutant lines

Original: GT16159

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16159

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 2; Position: 19504145 [Map]; Strand: w
      • AT2G47520.1 - [+] show detail - Integrase-type DNA-binding superfamily protein
        Distance: -576; Region: promoter
      • AT2G47530.1 - [+] show detail - Pollen Ole e 1 allergen and extensin family protein
        Distance: -75; Region: promoter
    Flanking Genome Sequence: GT16159 - 3-prime edge 
    GTTTTTACCG ACCGTTACCG ACCGTTTTCA TCCCTACCTT TATATATGTG 
    GAACACAATG TCGACAGAAG TATCTTAAGA TTATATAGGA CAAGTGTCAA 
    CTAGATGTTG GCCGGAAGAG AAGAGACATA ATTGGGTGCA CGTTTAAATT 
    TTTATATTTC CCCACCAAAA CCTAATAATA TTGATCGAAA AATGTTTTGA 
    TAATTATTAC TCATCACACT ACACCAAGCT AGGA

AT2G47520.1

Model type
Protein coding
Short Description
Integrase-type DNA-binding superfamily protein
Curator Summary
encodes a member of the ERF (ethylene response factor) subfamily B-2 of ERF/AP2 transcription factor family. The protein contains one AP2 domain. There are 5 members in this subfamily including RAP2.2 AND RAP2.12.
Computational Description
HYPOXIA RESPONSIVE ERF (ETHYLENE RESPONSE FACTOR) 2 (HRE2); CONTAINS InterPro DOMAIN/s: DNA-binding, integrase-type (InterPro:IPR016177), Pathogenesis-related transcriptional factor/ERF, DNA-binding (InterPro:IPR001471); BEST Arabidopsis thaliana protein match is: ethylene-responsive element binding protein (TAIR:AT3G16770.1); Has 6285 Blast hits to 5826 proteins in 255 species: Archae - 0; Bacteria - 2; Metazoa - 0; Fungi - 0; Plants - 6266; Viruses - 2; Other Eukaryotes - 15 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT2G47530.1

Model type
Protein coding
Short Description
Pollen Ole e 1 allergen and extensin family protein
Computational Description
Pollen Ole e 1 allergen and extensin family protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; CONTAINS InterPro DOMAIN/s: Pollen Ole e 1 allergen/extensin (InterPro:IPR006041); BEST Arabidopsis thaliana protein match is: proline-rich protein 1 (TAIR:AT1G54970.1); Has 189 Blast hits to 189 proteins in 24 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 189; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR