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GT16031

CSHL Arabidopsis genetrap mutant lines

Original: GT16031

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT16031

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5446796 [Map]; Strand: c
      • AT1G15820.1 - [+] show detail - light harvesting complex photosystem II subunit 6
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT16031 - 3-prime edge 
    ATGAAACGGT AGAGGATTTT ACCGACCGTT ACCGACCGTT TTCATCCCTA 
    CTCTCCAGCT TCTCAAGTCC GGCTCATAAA CACCGTCGCG GTTTTTCCCG 
    GCGAGACCCA ACGGATCGAA GAATCTCCCA CCGGGGTATC CCTGATCGCC 
    GGTATAGTTC GCGAAATTCT CGGCGGTCTT CGACCATGGC GTTGCCCACT 
    CAACCGATTG AGAATCCGGG TTGAAGAAAT CGACCCATCG TTTGCTCTCC 
    ACCCAACCCA TGAGAAGCAA TTGGGTTCCA AGAAGCGACC CGAACGAGAA 
    GGGAGCGATC GCGTCTGGCT GGGCTCCAGC TTCAAACCAT GCCACACCGC 
    TCCAGGCCTG GCCGACGAAG ATCCCAAGAA CCGCTGCCAT CGCCCATCGG 
    CCATGGATCA GCTCAGCCTC TCTGTACCAT TTCAGAAAAG CCGGGTCTTT 
    CCCCAAACCC AATGGGTCGA ACCCGAAATC TCCTGGGAGC CT

  • 5 prime edge [+] show sequence

    1. Chromosome: 1; Position: 5446745 [Map]; Strand: c
      • AT1G15820.1 - [+] show detail - light harvesting complex photosystem II subunit 6
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT16031 - 5-prime edge 
    CCTACTTTCT CCCTGCTGGA GAGGCTGAAA TTGGCAGAGA TTAAGCACTC 
    GAGGCTCGCA ATGGTTGCCA TGTTGATCTT TTACTTTGAG GCCGGGCAGG 
    GGAAAACGCC TCTCGGTGCT CTTGGTTTGT GAGAAAACGG CATGATGTTT 
    TTGATTCTGT AGATACAATT TCTCTTCCAA AAACCTAATG TTTCTCTTCT 
    TCAATGTGAC ATTTGGGAAA AGATCATCAA ACCATTGCTT TAAATGTAAA 
    ATGAAATCAT GAGGCTTGTT CGTAGATAAC TTTATTATCA CAACTCAAAT 
    GTGAAAGGGA ATACTAAACA TCAATGAAAG AGATCCACAA CTT

AT1G15820.1

Model type
Protein coding
Short Description
light harvesting complex photosystem II subunit 6
Curator Summary
Lhcb6 protein (Lhcb6), light harvesting complex of photosystem II.
Computational Description
light harvesting complex photosystem II subunit 6 (LHCB6); FUNCTIONS IN: chlorophyll binding; INVOLVED IN: photosynthesis, nonphotochemical quenching; LOCATED IN: in 7 components; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Chlorophyll A-B binding protein (InterPro:IPR001344); BEST Arabidopsis thaliana protein match is: photosystem I light harvesting complex gene 6 (TAIR:AT1G19150.1); Has 2316 Blast hits to 2191 proteins in 220 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 1959; Viruses - 0; Other Eukaryotes - 355 (source: NCBI BLink).
Link
InterPro Scan - TAIR