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Mutant Lines
GT16022

GT16022

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

anthocyanin accumulation in approximately 1/4 of seed

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	purple (PATO:0000951)

Original: GT16022

Determination of insertion point(s)

3 prime edge [+] show sequence

Chromosome: 4; Position: 7337636 [Map]; Strand: c
- AT4G12390.1 - [+] show detail - pectin methylesterase inhibitor 1
  Distance: 280; Region: intergenic
- AT4G12400.2 - [+] show detail - stress-inducible protein, putative
  Distance: 1023; Region: intergenic

AAACGGTAGA GGATTTTACC GACCGTTACC GACCGTTTTC ATCCCTACAC 
ATAAGCTCCA TTTACTTTGG TAGTTTGGGA GCAGGTGTGA AAATCTTATC 
ACTAGTCTAA AGTTAAACAC TAAGTGCTCT TTTAATTTAA TTTAAATAAA 
CCTTCGGATT GTTAGCTTTA GGGAAAGACA AGTCCAAGAC GTAACGGTGA 
AGAGTGACCA TGGAAGCAAA TTAGGTACAA TTATGGAAAT ACAAATAATT 
TTAGGCTTTT TGCCACATGA ACAAAACATG CAAGTATATG TATTCCTGTT 
TAATAATGGT TTAATACATC AAATTCTTTG ATGAATATAT CCTCTTAAAT 
TACAATTTAA CATCTATTAA CCCTTTTCCA TGAAATGTTT ATGAAAAATC 
TATGCAAATT CTATTGCAAG AAAAAAAGAA AGTAATCTGT AATTTGGTTA 
ACCATCGGTA CACCTCCCAT TAAGCATTTG TGATTTGTGT AGTGAACCGA 
TTAACCGAAT AGTATTTATT AGGAACATGT CATATTTATG AAAATAATCG 
TTAATTAACA AAATAAAAAG TTATGGGAAA TAGTTTTATG TTCTAAATCA 
AAATTCAGAA ATTATTACTT ATGTTTTTTC AGTTAGCAAA GGAAAATTAC 
ATATCTTAGA TTCTGAAACT TAAATTCTAA AATTAAAACT CCTAAACTTT 
CATAGATTTT AAAATCTTAA GATCTTTTTG TTTTTGTTTT TTGGGCAAAC 
AAAATCTTAA GATCTAAATC TTAAAATACT TTCCACAAAA CCGTTCCACT 
AGAGAAAAAT CTATATATAT ATTTTTTTAA ACTATATTTT TG

5 prime edge [+] show sequence

Chromosome: 4; Position: 7337618 [Map]; Strand: c
- AT4G12390.1 - [+] show detail - pectin methylesterase inhibitor 1
  Distance: 262; Region: intergenic
- AT4G12400.2 - [+] show detail - stress-inducible protein, putative
  Distance: 1041; Region: intergenic

CTTTCTCCCT GCTTATGTGG AAAGAAGTCA TCATAAGATT ATTCAAATAG 
TAAAGTGACT AGCTCTTGGT CTAATGGTTT CCGTGAAAAG GAACAAAAAC 
ACTAAAGGGT ATGCAGAAAG TAGGAGATTT GTCCAACTTA GAGGTTATAA 
TTTGTATGCT TAGAAAAAGT GTATATGTGT GAAGTAAGAA ACTCATCTGA 
TTTTAGAAAA CAACATTGGT TATTAGAGTG GTTAAAAATG GTAAACATTA 
TTGTGGCCAT CCATTGCTTA TATCCGAGAC CGTAACTATA TTGAAATGTA 
GGAGCTCATC CAATTTTTGT GGCCAATTCT TTTTCTCCAT AAACCCGTTA 
AAATCATCGT TATCTCTAGT CGAAACCATG ACAAAAGCAT AAACATCCCA 
AGCCTACACA TAAATACAAA GTATCATAAA GAAACAAATC ACCCACTAGG 
ACAAAAAAGA AAATACATGA CAAAACCTTA TTAAGGACCG AATTTTAATT 
TATTAGCCGA ATATTCTATG ACTTATGCCT AGCCGCGAAC CGGTTTACAA 
GAGCCAATGC ATTACTAGTA ACTCGAGCCA CATGAACCAC TCTTCTTCTA 
ATCGCTGATT TGACCACACC GTCCATGACC TTTCCATCGA ACCCATCCAG 
ACACGTTGTC TCATCCGTTA AGGCAGCACT AACCCAAGTC TCAACGTTAC 
TTAGTCTCCA CAAGAACTCG TCTCGATCAC GACCAGATCG ACAA

AT4G12390.1

Model type: Protein coding
Short Description: pectin methylesterase inhibitor 1
Computational Description: pectin methylesterase inhibitor 1 (PME1); FUNCTIONS IN: enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pectinesterase inhibitor (InterPro:IPR006501); BEST Arabidopsis thaliana protein match is: Plant invertase/pectin methylesterase inhibitor superfamily protein (TAIR:AT1G62770.1); Has 665 Blast hits to 661 proteins in 39 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 665; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT4G12400.2

Model type: Protein coding
Short Description: stress-inducible protein, putative
Computational Description: stress-inducible protein, putative; FUNCTIONS IN: binding; INVOLVED IN: response to high light intensity, response to hydrogen peroxide, response to heat, response to stress; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 7 growth stages; CONTAINS InterPro DOMAIN/s: Heat shock chaperonin-binding (InterPro:IPR006636), Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: stress-inducible protein, putative (TAIR:AT1G62740.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink).
Link: InterPro Scan - TAIR