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GT15950

CSHL Arabidopsis genetrap mutant lines

Original: GT15950

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15950

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 3; Position: 18830229 [Map]; Strand: c
      • AT3G50670.1 - [+] show detail - U1 small nuclear ribonucleoprotein-70K
        Distance: -611; Region: promoter
      • AT3G50670.2 - [+] show detail - U1 small nuclear ribonucleoprotein-70K
        Distance: -653; Region: promoter
      • AT3G50674.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biolo...
        Distance: -934; Region: promoter
    Flanking Genome Sequence: GT15950 - 5-prime edge 
    TCCTACTTTA TCCCTGCAAA CGAGGATGGG GAAGTTTCTG TAATGCCAAT 
    GGATTTAGAG CTGGAAGTTT CTTTAGTTTC AAACTGTTCC AAAGAGGTGG 
    AACTCCAGGT TTACGTTCAT CTCACTCGAC AAGNGCTGTA GTGCACAAAT 
    GGAGACGCAA CCAACTATTC TTGGCTCATT TTTTCTCAAA AGGCTTTGAT 
    GTTGCAACCA ACAACAATTA CGCTGTTAGC GCACGAGACC AATGGTAAAA 
    GGTGTGCCCG TCAAGTTCAA TAGATCTCCA ACCTCGGTTC CATCATACTT 
    CACAAAATCA TTGGATGGAG AGCCACATCC TATGGAAGTG AATCAGTGAT 
    GGTCATTTGG AAATGCTTAA TTTTTCTTAT TATGGTTACT TTAAAATATT 
    TAAAAATTTA GAGCCTGTTA TTGTAAAAAT AAATAAAATT GGAATCTATT 
    TTAATTATGT

AT3G50670.1

Model type
Protein coding
Short Description
U1 small nuclear ribonucleoprotein-70K
Curator Summary
Encodes U1 snRNP 70K
Computational Description
U1 small nuclear ribonucleoprotein-70K (U1-70K); FUNCTIONS IN: RNA binding, nucleotide binding, nucleic acid binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal (InterPro:IPR022023), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G43370.1); Has 287 Blast hits to 284 proteins in 72 species: Archae - 6; Bacteria - 66; Metazoa - 0; Fungi - 0; Plants - 156; Viruses - 0; Other Eukaryotes - 59 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G50670.2

Model type
Protein coding
Short Description
U1 small nuclear ribonucleoprotein-70K
Curator Summary
Encodes U1 snRNP 70K
Computational Description
U1 small nuclear ribonucleoprotein-70K (U1-70K); FUNCTIONS IN: RNA binding, nucleotide binding; INVOLVED IN: nuclear mRNA splicing, via spliceosome; LOCATED IN: nucleus; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: U1 small nuclear ribonucleoprotein of 70kDa MW N-terminal (InterPro:IPR022023), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677); BEST Arabidopsis thaliana protein match is: RNA-binding (RRM/RBD/RNP motifs) family protein (TAIR:AT2G43370.1); Has 501 Blast hits to 501 proteins in 191 species: Archae - 0; Bacteria - 0; Metazoa - 216; Fungi - 126; Plants - 97; Viruses - 0; Other Eukaryotes - 62 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT3G50674.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G66790.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR