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GT15946

CSHL Arabidopsis genetrap mutant lines

Original: GT15946

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15946

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 440039 [Map]; Strand: w
      • AT4G01020.1 - [+] show detail - helicase domain-containing protein / IBR domain-containing protein / zinc fin...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15946 - 5-prime edge 
    CCTACTTTCT CCCTGGAGGA TGGACTGCCT ATCTATGCCT ACCGGCGGCA 
    GATTTTGAAG AAAATTCATT GTGAACAGGT ATCTTTAAGA ATCTCCAAGT 
    TGACAAGTGG TCTTTGGGTC CAAGCTAGTT TTGAATCACT TGAGTACAGA 
    AGATATTCGA GTTATGCTGT TGTCTTGTTG TACTAGTTCA TTAAGGTTCA 
    GTTTTCTCTG TTTTATAAAT GAGTCTGTGT TTGGTCATTT TGAGTGTGTA 
    ATATTTGATT TTAATTGTGT TTGTAGATAA TGGTGTTGAT TGGCGAAACT 
    GGTTCAGGGA AGAGCACTCA GTTAGTTCAG TTCCTTGCTG ATTCCGGAGT 
    TGCTGCTAGT GAGTCGATTG TTTGTACACA ACCACGGAAG ATTGCTGCCA 
    TGACATTGGC TGATCGGGTC AGAGAAGAAA GCAGTGGTTG TTATGAGGAA 
    AATACTGTTT CTTGTACTCC AACTTTTTCG TCTACTGAGG AGATTAGTTC 
    CAAAGTTGTA TACATGACGG ATAATTGTCT GCTTCAGCAC TACATGAAAG 
    ATCGGAGTTT GTCTGGCATT TCATGTGTTA TTATTGACGA AGCTCATGAA 
    AGAAGCTTAA ACACGGACCT TCTTTTGGCA TTGCTTAGAA AGTTGC

AT4G01020.1

Model type
Protein coding
Short Description
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related
Computational Description
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related; FUNCTIONS IN: in 6 functions; LOCATED IN: intracellular, chloroplast; CONTAINS InterPro DOMAIN/s: Helicase-associated domain (InterPro:IPR007502), Zinc finger, C2H2-like (InterPro:IPR015880), Zinc finger, RING-type, conserved site (InterPro:IPR017907), DNA/RNA helicase, DEAD/DEAH box type, N-terminal (InterPro:IPR011545), Domain of unknown function DUF1605 (InterPro:IPR011709), Zinc finger, C6HC-type (InterPro:IPR002867), Zinc finger, RING-type (InterPro:IPR001841), K Homology (InterPro:IPR004087), DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site (InterPro:IPR002464), DEAD-like helicase, N-terminal (InterPro:IPR014001), DNA/RNA helicase, C-terminal (InterPro:IPR001650), Zinc finger, C2H2-type (InterPro:IPR007087), Helicase, superfamily 1/2, ATP-binding domain (InterPro:IPR014021); BEST Arabidopsis thaliana protein match is: helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-related (TAIR:AT5G10370.1); Has 13197 Blast hits to 12409 proteins in 1676 species: Archae - 4; Bacteria - 3384; Metazoa - 3503; Fungi - 1989; Plants - 1444; Viruses - 760; Other Eukaryotes - 2113 (source: NCBI BLink).
Link
InterPro Scan - TAIR