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GT15877

CSHL Arabidopsis genetrap mutant lines

Original: GT15877

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15877

Determination of insertion point(s)

Notice

More than one insertion position or no insertion point is expected.

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13990785 [Map]; Strand: c
      • AT4G28200.1 - [+] show detail - FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATE...
        Distance: -335; Region: promoter
      • AT4G28210.1 - [+] show detail - embryo defective 1923
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15877 - 3-prime edge 
    AAACGGTAGA GGTATTTTAC CGACCGTTAC CGACCGTTTT CATCCCTAGG 
    CGCGAGTCTC CGTCGTTTTG TGGCTCCGGG GAAGTTTCCA AGTGTGAGAC 
    TTAGGGTTTT GACGAGGTGC GAGAAAGAAA ATGCACCCAA AGGTGGGATT 
    GAAGATGACG CGGAGCGATT TGCGAGACGA GAGAGCACGA TGCCTGATAG 
    ATTCAGATAT TTGACCAAAG AAGCTCCAGA TAGTCCAATT ATATGGCCAT 
    GGTTTGTTGG TACGTTTCTG CTTACTTTTG GCTTCGTTTT AGTTACCGTG 
    AATCATAAGT CTTGTAGCAA AATCAAATTT TTGGATTTGA AATTCATTAT 
    TGGTGCTGTT TT

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 13983962 [Map]; Strand: c
      • AT4G28180.1 - [+] show detail - unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-ter...
        Distance: -245; Region: promoter
      • AT4G28181.1 - [+] show detail - unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archa...
        Distance: 0; Region: exon1 (CDS)
    Flanking Genome Sequence: GT15877 - 5-prime edge 
    CTTTCTCCTT TAATGTCCGG TGTCCCTGTC CAAGGCAATC GGCAGTTGTG 
    TGTTGAAATT ATCCCAACGA TGATGGGTCG CTATCTAACG AGATATTTGT 
    CCATCCGCAT AATTTTCTTT TGAATATTTT AAAGAAAATC AAACACTAGC 
    GTTTTGTCTT TGAAGATATG AATGAATGAG ACAAATATCA GATTCTTTAT 
    CAAAGTGGAT AAAACAAAAG AGCATAATCG AGCCCATAGT GAATATGGGC 
    CAACATGAGA AAGAGGCCCA TTAAAGTTGA CAAGTATATG ACTCGCGACT 
    CTCGAGAGAG CAGAGTGAGA GAGAGAGAGG AATTAGCAAA AGTAGAAAGA 
    AAATGGGATG CTGCTTCAGC GCCGGAAAAG TCACAGCTCC ACCAGTCGCC 
    GCCGCTCAAA TTCCTCCACC CCTCGAAGAA GAATCCGTCA AAGAAGTCGT 
    TGTTCAATCA GTCTCTGTCT CCGTCCCCAT ACCCATCTCC GTCCCTGTCC 
    CAGTCCCCGA CCTCGTTCCT TCCGCACCAA CAGTCTCAGA TTCAGAAGCT 
    CAAGTTCCTC TTCCTCTCTC ACCTCCAGCT CCGGAGATCT CTCACAGCAA 
    GTCCGACATT TGCAGCGTCT CTGTCTCTCA CAGCTACTCC ACTGCCACAA 
    CTGCTACCGC TGCGTCCATC CTCGAAGACG ATGCTCTCAG AAAACCTCAC 
    CGTCCTCCTC CCTCTTTCTC TTCCACCTCT CGCCGTAACA GGCCTG

AT4G28180.1

Model type
Protein coding
Computational Description
unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: N-terminal protein myristoylation; LOCATED IN: cellular_component unknown; EXPRESSED IN: 15 plant structures; EXPRESSED DURING: 8 growth stages; Has 1508 Blast hits to 1315 proteins in 223 species: Archae - 4; Bacteria - 127; Metazoa - 687; Fungi - 310; Plants - 142; Viruses - 28; Other Eukaryotes - 210 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28181.1

Model type
Protein coding
Computational Description
unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28200.1

Model type
Protein coding
Computational Description
FUNCTIONS IN: molecular_function unknown; INVOLVED IN: RNA processing; LOCATED IN: intracellular; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: RNA-processing protein, HAT helix (InterPro:IPR003107), U3 small nucleolar RNA-associated protein 6 (InterPro:IPR013949); Has 492 Blast hits to 480 proteins in 206 species: Archae - 0; Bacteria - 2; Metazoa - 128; Fungi - 191; Plants - 60; Viruses - 0; Other Eukaryotes - 111 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G28210.1

Model type
Protein coding
Short Description
embryo defective 1923
Computational Description
embryo defective 1923 (emb1923); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: embryo development ending in seed dormancy; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR