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Mutant Lines
GT15733

GT15733

CSHL Arabidopsis genetrap mutant lines

Phenotypes

Morphological phenotypes

Original description

semi-sterile (unconfirmed)

Anatomical entity /structure development stage	Phenotypes
seed (PO:0009010)	present in fewer numbers in organism (PATO:0001997)

Original: GT15733

Determination of insertion point(s)

3 prime edge [+] show sequence
1. Chromosome: 5; Position: 2609628 [Map]; Strand: w
  - AT5G08130.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: -22; Region: promoter
  - AT5G08130.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT5G08130.3 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: -22; Region: promoter
  - AT5G08130.4 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon2 (5UTR)
  - AT5G08130.5 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon2 (5UTR)
  - AT5G08130.6 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon2 (5UTR)
Flanking Genome Sequence: GT15733 - 3-prime edge
```
ATGAAACGGT AGAGGTATTT TACCGACCGT TACCGACCGT TTTCATCCCT 
ACAGATTAGT AATAGAATAA TTTAAAAAGA ATTCAAAAAC CGTCGAAGCT 
CTGTCGTTCA TGGAGCTTCC TCAACCTCGT CCCTTCAAAA CCCAAGGTAA 
ACACCATTAT CAGATATTAT TGTTACCAAT TCCTTTATTT TATTTTAAAA 
CAGAGTGTTT AGTTTCTACA AGATTCATAA TTTTAAATTT ATGTATTTTT 
TTGAATTTTG ATATATATAT TAAGAAGAAT TTCGCACAGG GAGAAAACCA 
ACACATGATT TTTTATCGCT CTGCAGTCAT TCAACCGTCC ACCCAGATCC 
AAAGCCAACA CCACCACCTT
```
5 prime edge [+] show sequence
1. Chromosome: 5; Position: 2609682 [Map]; Strand: w
  - AT5G08130.1 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: -76; Region: promoter
  - AT5G08130.2 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon1 (5UTR)
  - AT5G08130.3 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: -76; Region: promoter
  - AT5G08130.4 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon2 (5UTR)
  - AT5G08130.5 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon2 (5UTR)
  - AT5G08130.6 - [+] show detail - basic helix-loop-helix (bHLH) DNA-binding superfamily protein
    Distance: 0; Region: exon2 (5UTR)
Flanking Genome Sequence: GT15733 - 5-prime edge
```
CTTTCTCCCT GCTAATCTGT GCGCGGGAAT TATCGCAAAA ATTGGCTAGC 
AGCTCAGATC TGCGACTTGT AGCAGCTGAT TCAAGAGATA TTGTGGTTTT 
CGATGGTTGA AGAAGCGGAA TTGAGCTCTG AAGTTGCTGA ATTATGCTTT 
CTCTGTATCT TTTTACCGAT AAAAATCCTC GAATTTGGTC AAATTCTGCT 
CGATTTAACC TAAATCAGCC TCCGCCGCAA CTTTTCTCAG CGAATTCCAC 
AGAATTCAAA CGGGAGAATC GGCAGAAGTC ACCAAATTCG TGGAATCGAT 
AGATCTGTCA TCAGAATTGG GTAGAAATTC AAGAGAATAA CCATAATTCA 
GCGGAATTCA TAGCTCAAAC CAACTCAATT TCGCATAATT CAAGTCAACC 
AATGAACATG GAGATACAAA AACTAGAATC CAAGTCAAAT CTCTAAAGAA 
CACGAATGGA TTAGATTTGA GCTAAGAAGC GTACCTTCTT CGACAGCAAA 
TTACGTGAAG CTTGGAGATC TCTAAGTCAG AGAAACCAAA TAAAAAGTTC 
GAATTACGAG ATAAAAACTC TTCGATCTGA TCGGAAAAAA AAAAAACCAC 
CCAAAAAGTT TTTTTTTTAA TTTTTTTTT
```

AT5G08130.1

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary: Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).
Computational Description: BIM1; FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1); Has 2460 Blast hits to 2449 proteins in 184 species: Archae - 0; Bacteria - 2; Metazoa - 308; Fungi - 82; Plants - 2059; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G08130.2

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary: Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).
Computational Description: BIM1; FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G08130.3

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary: Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).
Computational Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein; FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1); Has 2462 Blast hits to 2451 proteins in 182 species: Archae - 0; Bacteria - 2; Metazoa - 310; Fungi - 80; Plants - 2061; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).
Link: InterPro Scan - TAIR

AT5G08130.4

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary: Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).
Computational Description: BIM1; FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1).
Link: InterPro Scan - TAIR

AT5G08130.5

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary: Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).
Computational Description: BIM1; FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1).
Link: InterPro Scan - TAIR

AT5G08130.6

Model type: Protein coding
Short Description: basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Curator Summary: Arabidopsis thaliana basic helix-loop-helix (bHLH) family protein involved in brassinosteroid signaling. It synergistically interacts with BES1 to bind to E box sequences (CANNTG).
Computational Description: BIM1; FUNCTIONS IN: protein binding, DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: brassinosteroid mediated signaling pathway, regulation of transcription; LOCATED IN: nucleus; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Helix-loop-helix DNA-binding domain (InterPro:IPR001092), Helix-loop-helix DNA-binding (InterPro:IPR011598); BEST Arabidopsis thaliana protein match is: BES1-interacting Myc-like protein 2 (TAIR:AT1G69010.1).
Link: InterPro Scan - TAIR