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GT15680

CSHL Arabidopsis genetrap mutant lines

Original: GT15680

Phenotypes

Morphological phenotypes

Specific phenotypes were NOT observed.

Original: GT15680

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 1; Position: 24590907 [Map]; Strand: w
      • AT1G66050.1 - [+] show detail - Zinc finger (C3HC4-type RING finger) family protein
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT15680 - 3-prime edge 
    GAAACGGTAG AGGTATTTTA CCGACCGTTA CCGACCGTTT TCATCCCTAC 
    TCCCCACTGC CTACACTCTT GCCTGTCCTC CCAAGATTCT CCAACCAAAA 
    CACCTTGGTT TCTAGTGACA TCATTCGCAG CTGGTATGGG ACCAAAATGA 
    TCACGAGGTA TTGTCACAAA AAACTTACCG CTAGCAGCAT TAGCTTTCCC 
    AGTTTTTACT GCCCGCTCGG TAGTAAATGC TTTGTCAGGA CGGTCTTGGT 
    TGCGGATAAT ATGATGAACC TTGGCCGCAG TTGCCTCACC AGAACATTTG 
    GTAACATTTG CTAAACGAAT AGCAGAAACT AGAGCTAAGT TGATGCGAGG 
    ATTTTTCGCC ACATGTCTCG GAATTTTGCT TCGGCATATC ATACAAGTTA 
    GCTTCCCTTG ACCTACTGCC CATTTCTCGA AACATTTCAA ACAGAAATTG 
    TGCCCACACG GTGTCTACAA AACACACAAG TACAATACAT CCATTAGTCT 
    GCTAATCAAC ATTATCAAGT ATACAAATAA ACTAGCGATT CTACTACACT 
    TATGTGTACT AATCACAAGA TTCAACAAGG CATTAACACT CATCACAAGC 
    ATAAGACTGG TTGCAAATAA GCATTAGTGT GCTACTTCAA ATATTAATCA 
    TCCTTATCAA

AT1G66050.1

Model type
Protein coding
Short Description
Zinc finger (C3HC4-type RING finger) family protein
Curator Summary
Encodes a protein that is similar to VIM1 but is not involved in cytosine methylation. This protein has an N-terminal PHD domain and two RING domains surrounding an SRA domain. ORTH5/VIM2 has E3 ubiquitin ligase activity in vitro.
Computational Description
VARIANT IN METHYLATION 2 (VIM2); CONTAINS InterPro DOMAIN/s: Zinc finger, RING-type, conserved site (InterPro:IPR017907), Zinc finger, PHD-type, conserved site (InterPro:IPR019786), Zinc finger, RING-type (InterPro:IPR001841), Zinc finger, PHD-type (InterPro:IPR001965), SRA-YDG (InterPro:IPR003105), Zinc finger, C3HC4 RING-type (InterPro:IPR018957), Zinc finger, FYVE/PHD-type (InterPro:IPR011011); BEST Arabidopsis thaliana protein match is: Zinc finger (C3HC4-type RING finger) family protein (TAIR:AT1G66040.1); Has 6271 Blast hits to 5010 proteins in 428 species: Archae - 0; Bacteria - 14; Metazoa - 4526; Fungi - 407; Plants - 903; Viruses - 19; Other Eukaryotes - 402 (source: NCBI BLink).
Link
InterPro Scan - TAIR