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GT15679

CSHL Arabidopsis genetrap mutant lines

Original: GT15679

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15679

Determination of insertion point(s)

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5981958 [Map]; Strand: w
      • AT4G09432.1 - [+] show detail
        Distance: -6887; Region: intergenic
      • AT4G09440.1 - [+] show detail - Family of unknown function (DUF577)
        Distance: 257; Region: intergenic
    Flanking Genome Sequence: GT15679 - 5-prime edge 
    CCTACTTTCT CCCTTTTGGT AGTCTACAAA AAATCAGAAA TACCTAAGCA 
    CCTACTAAAG AACCAAGACC AATATTTGTA CTTGACTTGT TTTTCTATAC 
    AACGTTAATT CTTTCTACAA CTCCAAACTA TGTATCAAAA ACCATAGTCT 
    GCAAGCAGAA TTTCAGACTG TTCAAATCCG TCAGCCTCAG GTAGGTTCAG 
    CCAATCAAAC TTATCCTTTG GGAGCTCTTT GACCTTCTCA TTCACTCCTC 
    TCTCCACAAT CACATTGATT CTCCACAACA CGATCTTACT TTCCCATTTC 
    ATGCCTTTGA TTGCATGGAA TTTGTATTCT AACTTCCCGT ACCATTCCAT 
    TTGTTTAGGT TCTTGACAAT GTTTTCAAGA TCTCTGAAAG CTCTCCTCAC 
    AAGCCCAACT TCAATTCCTC TTTCCACAAG CTCTCTCACA GAATCTATCA 
    TCTTATTTGC AATCTTCTTA ACGGATTCAG CTTGGCTTGG AAATTCTCTC 
    AAGTGTATGG TCGCACAGAA TGCACCAGTA AACGCCAAAA CCCAGCAACT 
    GTTATCTACC AACAAGTCTC TTGGTGGGTT TAGCCTTA

  • 5 prime edge [+] show sequence

    1. Chromosome: 4; Position: 5981988 [Map]; Strand: w
      • AT4G09432.1 - [+] show detail
        Distance: -6917; Region: intergenic
      • AT4G09440.1 - [+] show detail - Family of unknown function (DUF577)
        Distance: 227; Region: intergenic
    Flanking Genome Sequence: GT15679 - 5-prime edge 
    AAATCAGAAA TACCTAAGCA CCTACTAAAG AACCAAGACC AATATTTGTA 
    CTTGACTTGT TTTTCTATAC AACGTTAATT CTTTCTACAA CTCCAAACTA 
    TGTATCAAAA ACCATAGTCT GCAAGCAGAA TTTCAGACTG TTCAAATCCG 
    TCAGCCTCAG GTAGGTTCAG CCAATCAAAC TTATCCTTTG GGAGCTCTTT 
    GACCTTCTCA TTC

AT4G09432.1

Model type
Other RNA
Curator Summary
Potential natural antisense gene, locus overlaps with AT4G09430
Link
InterPro Scan - TAIR

AT4G09440.1

Model type
Protein coding
Short Description
Family of unknown function (DUF577)
Computational Description
Family of unknown function (DUF577); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF577 (InterPro:IPR007598); BEST Arabidopsis thaliana protein match is: Family of unknown function (DUF577) (TAIR:AT5G37470.1); Has 63 Blast hits to 48 proteins in 2 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 63; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR