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GT15652

CSHL Arabidopsis genetrap mutant lines

Original: GT15652

Phenotypes

Morphological phenotypes

Original description

  • semi-sterile (unconfirmed)
Anatomical entity
/structure development stage		 Phenotypes
seed (PO:0009010)
  • present in fewer numbers in organism (PATO:0001997)

Original: GT15652

Determination of insertion point(s)

  • 3 prime edge [+] show sequence

    1. Chromosome: 4; Position: 212800 [Map]; Strand: c
      • AT4G00460.1 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: 0; Region: exon2 (CDS)
      • AT4G00460.2 - [+] show detail - RHO guanyl-nucleotide exchange factor 3
        Distance: 0; Region: exon2 (CDS)
    Flanking Genome Sequence: GT15652 - 3-prime edge 
    CGGTAGAGGT ATTTTACCGA CCGTTACCGA CCGTTTTCAT CCTCATAAAT 
    TTCTTGGACT ACAAGACATT CATTTGATTG CATCTCTAAA CCAGAGAGAC 
    ATTTGGAGCT CTTAGATTCA GTAAGGACAG GCCAGTTACA AGGAGAAGCT 
    TCACTACAGA AGCTGTTGGT TTCATCTATC TGGTCTGAAA ACCCTGAAGT 
    GGTCTCTGAA CAAGTTCGAG GGTAAACAAA GGAATCTATG CTCATCGTCG 
    AGTAAACCGG AGTTTCTACT GCTGATTGAT CATTTTGGTC AATGGATCTA 
    GGTGATTGAT GATCGTCGTT TTCATTNGGG ATCCAATAAA TTCTCCATCT 
    TTAAAATCTT AAAACACTCC TTAAAGGTCT GTTTTTTTTT GTTCTTGCTC 
    TGTTTCTTCT GAAGAAATAA CACAAAAAAA TGTAGATATA GCAAAAAGCT 
    TTGGAATTGT GATAATCAAG AAACTTTAGA AATTTGAAAG CGGGAGGTTT 
    TTGGATAGTG AAATTTCTTA GGACCAAAGA ACAATAAAGC AAGAAAGCAG 
    AAAGCAGAAA AAAAGAACCA TAAAAATCAG ATCAAATGAC TATAAAAATC 
    GCAATTTTAT TGAAAATTTC ACCGGAATTC AAAAAAAAAG TAAGTACCGA 
    TCAAGAACTA AAAGAAAGTC TGAAACTTTA AATTTGAAAG GAAAAGAACG 
    TTAAAGT

AT4G00460.1

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 292 Blast hits to 291 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 292; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Link
InterPro Scan - TAIR

AT4G00460.2

Model type
Protein coding
Short Description
RHO guanyl-nucleotide exchange factor 3
Curator Summary
Encodes a member of KPP-like gene family, homolog of KPP (kinase partner protein) gene in tomato. Also a member of the RopGEF (guanine nucleotide exchange factor) family, containing the novel PRONE domain (plant-specific Rop nucleotide exchanger), which is exclusively active towards members of the Rop subfamily.
Computational Description
RHO guanyl-nucleotide exchange factor 3 (ROPGEF3); CONTAINS InterPro DOMAIN/s: Rop nucleotide exchanger, PRONE (InterPro:IPR005512); BEST Arabidopsis thaliana protein match is: RHO guanyl-nucleotide exchange factor 2 (TAIR:AT1G01700.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Link
InterPro Scan - TAIR